Unaligned Sequence Similarity Search Using Deep Learning. - James K. Senter; Taylor M. Royalty; Andrew D. Steen; Amir Sadovnik (BIBM, 2019)

A comparison of dimensionality reduction methods for large biological data. - Ashley Babjac; Taylor M. Royalty; Andrew D. Steen; Scott J. Emrich (BCB, 2022)

Adapting Protein Language Models for Explainable Fine-Grained Evolutionary Pattern Discovery. - Ashley Babjac; Owen Queen; Shawn-Patrick Barhorst; Kambiz Kalhor; Andrew D. Steen; Scott J. Emrich (BIBM, 2023)