The Dawn of Open Access to Phylogenetic Data. - Andrew F. Magee; Michael R. May; Brian R. Moore (CoRR, 2014)

Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies. - Chris Whidden; Brian C. Claywell; Thayer Fisher; Andrew F. Magee; Mathieu Fourment; Frederick A. Matsen IV (CoRR, 2018)

Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts. - Andrew F. Magee; Sebastian Höhna; Tetyana I. Vasylyeva; Adam D. Leaché; Vladimir N. Minin (PLoS Comput. Biol., 2020)

Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. - Yucai Shao; Andrew F. Magee; Tetyana I. Vasylyeva; Marc A. Suchard (PLoS Comput. Biol., 2024)