Expectation and Variance of True and False Fragment Matches in DNA Restriction Mapping. - Andrew F. Siegel; Jared C. Roach; G. Van Den Engh (J. Comput. Biol., 1998)

Optimization of Restriction Fragment DNA Mapping. - Andrew F. Siegel; Jared C. Roach; C. Magness; Edward C. Thayer; G. Van Den Engh (J. Comput. Biol., 1998)

Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data. - Trey Ideker; Vesteinn Thorsson; Andrew F. Siegel; Leroy E. Hood (J. Comput. Biol., 2000)

Discovering regulatory and signalling circuits in molecular interaction networks. - Trey Ideker; Owen Ozier; Benno Schwikowski; Andrew F. Siegel (ISMB, 2002)

A Third Approach to Gene Prediction Suggests Thousands of Additional Human Transcribed Regions. - Gustavo Glusman; Shizhen Qin; M. Raafat El-Gewely; Andrew F. Siegel; Jared C. Roach; Leroy E. Hood; Arian F. A. Smit (PLoS Comput. Biol., 2006)

Performance of Portfolios Optimized with Estimation Error. - Andrew F. Siegel; Artemiza Woodgate (Manag. Sci., 2007)

Profit Estimation Error in the Newsvendor Model Under a Parametric Demand Distribution. - Andrew F. Siegel; Michael R. Wagner (Manag. Sci., 2021)

Technical Note - Data-Driven Profit Estimation Error in the Newsvendor Model. - Andrew F. Siegel; Michael R. Wagner (Oper. Res., 2023)