PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, Illustrated by a Pacific Oyster Case Study. - Erin Scott; Andrew Hoyle; Carron Shankland (PASM/PDMC, 2012)

Process Algebra with Layers: Multi-scale Integration Modelling Applied to Cancer Therapy. - Erin Scott; James Nicol; Jonathan Coulter; Andrew Hoyle; Carron Shankland (CIBB, 2016)

Optimising Antibiotic Treatments with Multi-objective Population-based Algorithms. - Mila Goranova; Marco A. Contreras-Cruz; Andrew Hoyle; Gabriela Ochoa (CEC, 2020)

Multi-objective evolutionary design of antibiotic treatments. - Gabriela Ochoa; Lee A. Christie; Alexander E. I. Brownlee; Andrew Hoyle (Artif. Intell. Medicine, 2020)

When and why direct transmission models can be used for environmentally persistent pathogens. - Lee Benson; Ross S. Davidson; Darren M. Green; Andrew Hoyle; Mike R. Hutchings; Glenn Marion (PLoS Comput. Biol., 2021)

Evolutionary optimisation of antibiotic dosing regimens for bacteria with different levels of resistance. - Mila Goranova; Gabriela Ochoa; Patrick Maier 001; Andrew Hoyle (Artif. Intell. Medicine, 2022)