Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. - Oleksiy Kohany; Andrew J. Gentles; Lukasz Hankus; Jerzy Jurka (BMC Bioinform., 2006)

Fast calculation of pairwise mutual information for gene regulatory network reconstruction. - Peng Qiu; Andrew J. Gentles; Sylvia K. Plevritis (Comput. Methods Programs Biomed., 2009)

Reducing the Computational Complexity of Information Theoretic Approaches for Reconstructing Gene Regulatory Networks. - Peng Qiu; Andrew J. Gentles; Sylvia K. Plevritis (J. Comput. Biol., 2010)

Discovering Biological Progression Underlying Microarray Samples. - Peng Qiu; Andrew J. Gentles; Sylvia K. Plevritis (PLoS Comput. Biol., 2011)

Identifying Network Perturbation in Cancer. - Maxim Grechkin; Benjamin A. Logsdon; Andrew J. Gentles; Su-In Lee (PLoS Comput. Biol., 2016)

Multimodal data fusion for cancer biomarker discovery with deep learning. - Sandra Steyaert; Marija Pizurica; Divya Nagaraj; Priya Khandelwal; Tina Hernandez-Boussard; Andrew J. Gentles; Olivier Gevaert (Nat. Mac. Intell., 2023)