3DIV: A 3D-genome Interaction Viewer and database. - Dongchan Yang; Insu Jang; Jinhyuk Choi; Minseo Kim; Andrew J. Lee; Hyun-Woong Kim; Junghyun Eom; Dongsup Kim; Inkyung Jung; Byungwook Lee (Nucleic Acids Res., 2018)

A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops. - Jayoung Ryu; Hyun-Woong Kim; Dongchan Yang; Andrew J. Lee; Inkyung Jung (BMC Bioinform., 2019)

GEM-Finder: Dissecting GWAS Variants via Long-Range Interacting Cis-Regulatory Elements with Differentiationspecific Genes. - Gyeongsik Park; Andrew J. Lee; Inkyung Jung (RECOMB, 2025)