BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data. - Ken Chen 001; John W. Wallis; Cyriac Kandoth; Joelle M. Kalicki-Veizer; Karen L. Mungall; Andrew J. Mungall; Steven J. M. Jones; Marco A. Marra; Timothy J. Ley; Elaine R. Mardis; Richard K. Wilson; John N. Weinstein; et al. (Bioinform., 2012)

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data. - Inanç Birol; Anthony Raymond; Shaun D. Jackman; Stephen Pleasance; Robin Coope; Greg A. Taylor; Macaire Man Saint Yuen; Christopher I. Keeling; Dana Brand; Benjamin P. Vandervalk; Heather Kirk; Pawan Pandoh; et al. (Bioinform., 2013)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)

MAVIS: merging, annotation, validation, and illustration of structural variants. - Caralyn Reisle; Karen L. Mungall; Caleb Choo; Daniel Paulino; Dustin W. Bleile; Amir Muhammadzadeh; Andrew J. Mungall; Richard A. Moore; Inna Shlafman; Robin Coope; Stephen Pleasance; Yussanne Ma; et al. (Bioinform., 2019)