Balancing Confidentiality and Sharing of Genomic and Phenotypic Data in a Clinical Research System. - Daniel Veltri; Zhiwen Li; Sandhya Xirasagar; Andrew J. Oler; Xi Cheng; Ke Huang; Jason Barnett; Lingwen Zhang; Octavio Juarez Espinosa; Yongjie Fan; Morgan Similuk; Magdalena Walkiewicz; et al. (BCB, 2018)

Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis. - Nick Weber; David Liou; Jennifer Dommer; Philip MacMenamin; Mariam Quiñones; Ian Misner; Andrew J. Oler; Joe Wan; Lewis Kim; Meghan Coakley McCarthy; Samuel Ezeji; Karlynn Noble; et al. (Bioinform., 2018)

PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. - Ling Luo 001; Shankai Yan; Po-Ting Lai; Daniel Veltri; Andrew J. Oler; Sandhya Xirasagar; Rajarshi Ghosh; Morgan Similuk; Peter N. Robinson; Zhiyong Lu (Bioinform., 2021)

PhenoGene: Disease-gene prioritization using graph embedding on patient phenotypic profiles. - Shankai Yan; Ling Luo 001; Li Fang; Daniel Veltri; Andrew J. Oler; Rajarshi Ghosh; Chih-Hsuan Wei; Morgan Similuk; Kai Wang; Zhiyong Lu (AMIA, 2022)

PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. - Shankai Yan; Ling Luo 001; Po-Ting Lai; Daniel Veltri; Andrew J. Oler; Sandhya Xirasagar; Rajarshi Ghosh; Morgan Similuk; Peter N. Robinson; Zhiyong Lu (J. Biomed. Informatics, 2022)