RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs. - Andrew J. Olson; Nihar Sheth; Jason S. Lee; G. J. Hannon; Ravi Sachidanandam (Nucleic Acids Res., 2006)

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context. - Jeremiah J. Faith; Andrew J. Olson; Timothy S. Gardner; Ravi Sachidanandam (BMC Bioinform., 2007)

Analysis of Large-Scale Sequencing of Small RNAs. - Andrew J. Olson; J. Brennecke; A. A. Aravin; G. J. Hannon; Ravi Sachidanandam (Pacific Symposium on Biocomputing, 2008)