chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. - Yann S. Dufour; Gary E. Wesenberg; Andrew J. Tritt; Jeremy D. Glasner; Nicole T. Perna; Julie C. Mitchell; Timothy J. Donohue (Nucleic Acids Res., 2010)

Mauve Assembly Metrics. - Aaron E. Darling; Andrew J. Tritt; Jonathan A. Eisen; Marc T. Facciotti (Bioinform., 2011)

HDMF: Hierarchical Data Modeling Framework for Modern Science Data Standards. - Andrew J. Tritt; Oliver Rübel; Benjamin K. Dichter; Ryan Ly; Donghe Kang; Edward F. Chang; Loren M. Frank; Kristofer E. Bouchard (IEEE BigData, 2019)

PyUoI: The Union of Intersections Framework in Python. - Pratik S. Sachdeva; Jesse Livezey; Andrew J. Tritt; Kristofer E. Bouchard (J. Open Source Softw., 2019)

Efficient Quantum Counting and Quantum Content-Addressable Memory for DNA Similarity. - Jan Balewski; Daan Camps; Katherine Klymko; Andrew J. Tritt (QCE, 2023)

The Artificial Intelligence Ontology: LLM-Assisted Construction of AI Concept Hierarchies. - Marcin P. Joachimiak; Mark A. Miller; J. Harry Caufield; Ryan Ly; Nomi L. Harris; Andrew J. Tritt; Christopher J. Mungall; Kristofer E. Bouchard (Appl. Ontology, 2024)

Methods for Linking Data to Online Resources and Ontologies with Applications to Neurophysiology. - Matthew Avaylon; Ryan Ly; Andrew J. Tritt; Benjamin K. Dichter; Kristofer E. Bouchard; Christopher J. Mungall; Oliver Rübel (CoRR, 2024)

The Genome Architecture of the Copepod Eurytemora carolleeae - the Highly Invasive Atlantic Clade of the Eurytemora affinis Species Complex. - Zhenyong Du; Gregory Gelembiuk; Wynne Moss; Andrew J. Tritt; Carol Eunmi Lee (Genom. Proteom. Bioinform., 2024)