Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes. - Andrew James Perry; Bosco K. Ho (Source Code Biol. Medicine, 2013)

RNAsik: A Pipeline for complete and reproducible RNA-seq analysis that runs anywhere with speed and ease. - Kirill Tsyganov; Andrew James Perry; Stuart Kenneth Archer; David R. Powell (J. Open Source Softw., 2018)