Detecting dynamic and genetic effects on brain structure using high-dimensional cortical pattern matching. - Paul M. Thompson; Kiralee M. Hayashi; Greig I. de Zubicaray; Andrew L. Janke; Stephen E. Rose; James Semple; David M. Doddrell; Tyrone D. Cannon; Arthur W. Toga (ISBI, 2002)

Statistical Analysis of Longitudinal MRI Data: Applications for Detection of Disease Activity in MS. - Sylvain Prima; Nicholas Ayache; Andrew L. Janke; Simon J. Francis; Douglas L. Arnold; D. Louis Collins (MICCAI (1), 2002)

Temporal Lobe Epilepsy Lateralization Based on MR Image Intensity and Registration Features. - Simon Duchesne; Neda Bernasconi; Andrew L. Janke; Andrea Bernasconi; D. Louis Collins (MICCAI (1), 2003)

Cognition driven deformation modelling - Andrew L. Janke (2003)

Whole-brain voxel-based statistical analysis of gray matter and white matter in temporal lobe epilepsy. - Neda Bernasconi; Simon Duchesne; Andrew L. Janke; Jason P. Lerch; D. Louis Collins; Andrea Bernasconi (NeuroImage, 2004)

Mapping hippocampal and ventricular change in Alzheimer disease. - Paul M. Thompson; Kiralee M. Hayashi; Greig I. de Zubicaray; Andrew L. Janke; Stephen E. Rose; James Semple; Michael S. Hong; David H. Herman; David Gravano; David M. Doddrell; Arthur W. Toga (NeuroImage, 2004)

The Use of Unwrapped Phase in MR Image Segmentation: A Preliminary Study. - Pierrick Bourgeat; Jurgen Fripp; Andrew L. Janke; Graham J. Galloway; Stuart Crozier; Sébastien Ourselin (MICCAI (2), 2005)

Symmetric Atlasing and Model Based Segmentation: An Application to the Hippocampus in Older Adults. - Günther Grabner; Andrew L. Janke; Marc M. Budge; David Smith; Jens C. Pruessner; D. Louis Collins (MICCAI (2), 2006)

Evidence of altered prefrontal-thalamic circuitry in schizophrenia: An optimized diffusion MRI study. - Stephen E. Rose; Jonathan B. Chalk; Andrew L. Janke; Mark W. Strudwick; Louisa C. Windus; Dominique E. Hannah; John J. McGrath; Christos Pantelis; Stephen J. Wood; Bryan J. Mowry (NeuroImage, 2006)

Corrigendum to "Mapping hippocampal and ventricular change in Alzheimer disease" [NeuroImage 22 (2004) 1754-1766]. - Paul M. Thompson; Kiralee M. Hayashi; Greig I. de Zubicaray; Andrew L. Janke; Stephen E. Rose; James Semple; Michael S. Hong; David H. Herman; David Gravano; David M. Doddrell; Arthur W. Toga (NeuroImage, 2007)

Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils. - Richard G. Boyes; Jeffrey L. Gunter; Chris Frost 001; Andrew L. Janke; Thomas Yeatman; Derek L. G. Hill; Matt A. Bernstein; Paul M. Thompson; Michael W. Weiner; Norbert Schuff; Gene E. Alexander; Ronald J. Killiany; et al. (NeuroImage, 2008)

Improved Precision in the Measurement of Longitudinal Global and Regional Volumetric Changes via a Novel MRI Gradient Distortion Characterization and Correction Technique. - Vladimir S. Fonov; Andrew L. Janke; Zografos Caramanos; Douglas L. Arnold; Sridar Narayanan; G. Bruce Pike; D. Louis Collins (MIAR, 2010)

New prototype neuronavigation system based on preoperative imaging and intraoperative freehand ultrasound: system description and validation. - Laurence Mercier; Rolando Del Maestro; Kevin Petrecca; Anna Kochanowska; Simon Drouin; Charles X. B. Yan; Andrew L. Janke; Sean Jy-Shyang Chen; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2011)

Brain templates and atlases. - Alan C. Evans; Andrew L. Janke; D. Louis Collins; Sylvain Baillet (NeuroImage, 2012)

Segmentation of the C57BL/6J mouse cerebellum in magnetic resonance images. - Jeremy F. P. Ullmann; Marianne D. Keller; Charles Watson; Andrew L. Janke; Nyoman D. Kurniawan; Zhengyi Yang 004; Kay Richards; George Paxinos; Gary F. Egan; Steven Petrou; Perry F. Bartlett; Graham J. Galloway; et al. (NeuroImage, 2012)

Spatial False Discovery Rate Control for Magnetic Resonance Imaging Studies. - Hien Duy Nguyen; Andrew L. Janke; Nicolas Cherbuin; Geoffrey J. McLachlan; Perminder S. Sachdev; Kaarin Anstey (DICTA, 2013)

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex. - Jeremy F. P. Ullmann; Charles Watson; Andrew L. Janke; Nyoman D. Kurniawan; David C. Reutens (NeuroImage, 2013)

Automated Segmentation of White Matter Lesions Using Global Neighbourhood Given Contrast Feature-Based Random Forest and Markov Random Field. - Pallab Kanti Roy; Alauddin Bhuiyan; Andrew L. Janke; Patricia M. Desmond; Tien Yin Wong; Elsdon Storey; Walter P. Abhayaratna; Kotagiri Ramamohanarao (ICHI, 2014)

The multi-modal Australian ScienceS Imaging and Visualization Environment (MASSIVE) high performance computing infrastructure: applications in neuroscience and neuroinformatics research. - Wojtek Goscinski; Paul McIntosh; Ulrich Claus Felzmann; Anton Maksimenko; Christopher Hall; Timur Gureyev; Darren Thompson; Andrew L. Janke; Graham J. Galloway; Neil E. B. Killeen; Parnesh Raniga; Owen Kaluza; et al. (Frontiers Neuroinformatics, 2014)

False Discovery Rate Control in Magnetic Resonance Imaging Studies via Markov Random Fields. - Hien Duy Nguyen; Geoffrey J. McLachlan; Nicolas Cherbuin; Andrew L. Janke (IEEE Trans. Medical Imaging, 2014)

Automatic white matter lesion segmentation using contrast enhanced FLAIR intensity and Markov Random Field. - Pallab Kanti Roy; Alauddin Bhuiyan; Andrew L. Janke; Patricia M. Desmond; Tien Yin Wong; Walter P. Abhayaratna; Elsdon Storey; Kotagiri Ramamohanarao (Comput. Medical Imaging Graph., 2015)

WorkWays: interacting with scientific workflows. - Hoang Anh Nguyen; David Abramson 001; Timoleon Kipouros; Andrew L. Janke; Graham J. Galloway (Concurr. Comput. Pract. Exp., 2015)

MINC 2.0: A Flexible Format for Multi-Modal Images. - Robert D. Vincent; Peter Neelin; Najmeh Khalili-Mahani; Andrew L. Janke; Vladimir S. Fonov; Steven M. Robbins; Leila Baghdadi; Jason P. Lerch; John G. Sled; Reza Adalat; David MacDonald; Alex P. Zijdenbos; et al. (Frontiers Neuroinformatics, 2016)

Maximum Pseudolikelihood Estimation for Model-Based Clustering of Time Series Data. - Hien Duy Nguyen; Geoffrey J. McLachlan; Pierre Orban; Pierre Bellec; Andrew L. Janke (Neural Comput., 2017)

An ontologically consistent MRI-based atlas of the mouse diencephalon. - Charles Watson; Andrew L. Janke; Carlo Hämäläinen; Shahrzad Moeiniyan Bagheri; George Paxinos; David C. Reutens; Jeremy F. P. Ullmann (NeuroImage, 2017)

Whole-volume clustering of time series data from zebrafish brain calcium images via mixture modeling. - Hien Duy Nguyen; Jeremy F. P. Ullmann; Geoffrey J. McLachlan; Venkatakaushik Voleti; Wenze Li; Elizabeth M. C. Hillman; David C. Reutens; Andrew L. Janke (Stat. Anal. Data Min., 2018)

Putting the Trust into Trusted Data Repositories: A Federated Solution for the Australian National Imaging Facility. - Andrew James Mehnert; Andrew L. Janke; Marco Gruwel; Wojtek James Goscinski; Thomas G. Close; Dean Taylor; Aswin Narayanan; George Vidalis; Graham J. Galloway; Andrew E. Treloar (Int. J. Digit. Curation, 2019)

DeepQSM - using deep learning to solve the dipole inversion for quantitative susceptibility mapping. - Steffen Bollmann; Kasper Gade Bøtker Rasmussen; Mads Kristensen; Rasmus Guldhammer Blendal; Lasse Riis Østergaard; Maciej Plocharski; Kieran O'Brien; Christian Langkammer; Andrew L. Janke; Markus Barth (NeuroImage, 2019)