Faster Placement of Hydrogens in Protein Structures by Dynamic Programming. - Andrew Leaver-Fay; Yuanxin Liu; Jack Snoeyink (ALENEX/ANALC, 2004)

An Adaptive Dynamic Programming Algorithm for the Side Chain Placement Problem. - Andrew Leaver-Fay; Brian Kuhlman; Jack Snoeyink (Pacific Symposium on Biocomputing, 2005)

Rotamer-Pair Energy Calculations Using a Trie Data Structure. - Andrew Leaver-Fay; Brian Kuhlman; Jack Snoeyink (WABI, 2005)

Capturing Atomic Interactions with a Graphical Framework in Computational Protein Design. - Andrew Leaver-Fay (2006)

Maintaining solvent accessible surface area under rotamer substitution for protein design. - Andrew Leaver-Fay; Glenn L. Butterfoss; Jack Snoeyink; Brian Kuhlman (J. Comput. Chem., 2007)

Faster placement of hydrogens in protein structures by dynamic programming. - Andrew Leaver-Fay; Yuanxin Liu; Jack Snoeyink; Xueyi Wang (ACM J. Exp. Algorithmics, 2007)

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. - Ian W. Davis; Andrew Leaver-Fay; Vincent B. Chen; Jeremy N. Block; Gary J. Kapral; Xueyi Wang; Laura Weston Murray; W. Bryan Arendall III; Jack Snoeyink; Jane S. Richardson; David C. Richardson (Nucleic Acids Res., 2007)

On-the-Fly Rotamer Pair Energy Evaluation in Protein Design. - Andrew Leaver-Fay; Jack Snoeyink; Brian Kuhlman (ISBRA, 2008)

The challenge of designing scientific discovery games. - Seth Cooper; Adrien Treuille; Janos Barbero; Andrew Leaver-Fay; Kathleen Tuite; Firas Khatib; Alex Cho Snyder; Michael Beenen; David Salesin; David Baker 001; Zoran Popovic (FDG, 2010)

Predicting protein structures with a multiplayer online game. - Seth Cooper; Firas Khatib; Adrien Treuille; Janos Barbero; Jeehyung Lee; Michael Beenen; Andrew Leaver-Fay; David Baker 001; Zoran Popovic; Foldit players (Nat., 2010)

Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. - Robert Kleffner; Jeff Flatten; Andrew Leaver-Fay; David Baker 001; Justin B. Siegel; Firas Khatib; Seth Cooper (Bioinform., 2017)

A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design. - Rebecca F. Alford; Andrew Leaver-Fay; Lynda Gonzales; Erin L. Dolan; Jeffrey J. Gray (PLoS Comput. Biol., 2017)

Better together: Elements of successful scientific software development in a distributed collaborative community. - Julia Koehler Leman; Brian D. Weitzner; P. Douglas Renfrew; Steven M. Lewis; Rocco Moretti; Andrew M. Watkins; Vikram Khipple Mulligan; Sergey Lyskov; Jared Adolf-Bryfogle; Jason W. Labonte; Justyna Krys; RosettaCommons Consortium; et al. (PLoS Comput. Biol., 2020)