SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine. - Lane W. Votapka; Andrew M. Stokely; Anupam Anand Ojha; Rommie E. Amaro (J. Chem. Inf. Model., 2022)

NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation. - Andrew M. Stokely; Lane W. Votapka; Marcus T. Hock; Abigail E. Teitgen; James Andrew McCammon; Andrew D. McCulloch; Rommie E. Amaro (J. Chem. Inf. Model., 2024)