The Edinburgh Mouse Atlas: Using the CD. - Richard A. Baldock; Jonathan Bard; Roberto Brunelli; Bill Hill; Matthew Kaufman; Kristie Opstad; David Smith; Margaret Stark; Andrew M. Waterhouse; Yiya Yang; Duncan Davidson (Briefings Bioinform., 2001)

The Edinburgh Mouse Atlas and Gene-Expression Database: A Spatio-Temporal Database for Biological Research. - Albert Burger; Richard A. Baldock; Yiya Yang; Andrew M. Waterhouse; Derek Houghton; Nick Burton; Duncan Davidson (SSDBM, 2002)

EMAP and EMAGE - A framework for understanding spatially organized data. - Richard A. Baldock; Jonathan Bard; Albert Burger; Nicholas Burton; Jeffrey H. Christiansen; Guangjie Feng; Bill Hill; Derek Houghton; Matthew Kaufman; Jianguo Rao; James Sharpe; Allyson Ross; et al. (Neuroinformatics, 2003)

Jalview: Visualization and Analysis of Molecular Sequences, Alignments, and Structures. - Andrew M. Waterhouse; James B. Procter; David M. A. Martin; Geoffrey J. Barton (BMC Bioinform., 2005)

MACSIMS : multiple alignment of complete sequences information management system. - Julie Dawn Thompson; Arnaud Muller; Andrew M. Waterhouse; James B. Procter; Geoffrey J. Barton; Frédéric Plewniak; Olivier Poch (BMC Bioinform., 2006)

Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. - Andrew M. Waterhouse; James B. Procter; David M. A. Martin; Michele E. Clamp; Geoffrey J. Barton (Bioinform., 2009)