Using Diverse Information Sources to Retrieve Samples of Low Density Languages. - Andrew MacKinlay (ALTA, 2005)

POS Tagging with a More Informative Tagset. - Andrew MacKinlay; Timothy Baldwin (ALTA, 2005)

Reconsidering Language Identification for Written Language Resources. - Baden Hughes; Timothy Baldwin; Steven Bird; Jeremy Nicholson; Andrew MacKinlay (LREC, 2006)

Biomedical Event Annotation with CRFs and Precision Grammars. - Andrew MacKinlay; David Martínez 001; Timothy Baldwin (BioNLP@HLT-NAACL (Shared Task), 2009)

A Baseline Approach to the RTE5 Search Pilot. - Andrew MacKinlay; Timothy Baldwin (TAC, 2009)

Treeblazing: Using External Treebanks to Filter Parse Forests for Parse Selection and Treebanking. - Andrew MacKinlay; Rebecca Dridan; Dan Flickinger; Stephan Oepen; Timothy Baldwin (IJCNLP, 2011)

Extracting structured information from free-text medication prescriptions using dependencies. - Andrew D. MacKinlay; Karin M. Verspoor (DTMBIO@CIKM, 2012)

Simple Similarity-based Question Answering Strategies for Biomedical Text. - David Martínez 001; Andrew MacKinlay; Diego Mollá Aliod; Lawrence Cavedon; Karin Verspoor (CLEF (Online Working Notes/Labs/Workshop), 2012)

The Effects of Semantic Annotations on Precision Parse Ranking. - Andrew MacKinlay; Rebecca Dridan; Diana McCarthy; Timothy Baldwin (*SEM@NAACL-HLT, 2012)

Detecting modification of biomedical events using a deep parsing approach. - Andrew MacKinlay; David Martínez 001; Timothy Baldwin (BMC Medical Informatics Decis. Mak., 2012)

Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics. - Haibin Liu; Karin Verspoor; Donald C. Comeau; Andrew MacKinlay; W. John Wilbur (BioNLP@ACL (Shared Task), 2013)

Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data. - Andrew MacKinlay; David Martínez 001; Antonio Jimeno-Yepes; Haibin Liu; W. John Wilbur; Karin Verspoor (BioNLP@ACL (Shared Task), 2013)

How Noisy Social Media Text, How Diffrnt Social Media Sources? - Timothy Baldwin; Paul Cook; Marco Lui; Andrew MacKinlay; Li Wang (IJCNLP, 2013)

Detection of Protein Catalytic Sites in the Biomedical Literature. - Karin Verspoor; Andrew MacKinlay; Judith D. Cohn; Michael E. Wall (Pacific Symposium on Biocomputing, 2013)

Identifying Twitter Location Mentions. - Bo Han 002; Antonio Jimeno-Yepes; Andrew MacKinlay; Qiang Chen (ALTA, 2014)

Deep Belief Networks and Biomedical Text Categorisation. - Antonio Jimeno-Yepes; Andrew MacKinlay; Justin Bedo; Rahil Garvani; Qiang Chen (ALTA, 2014)

Integrating UIMA with Alveo, a human communication science virtual laboratory. - Dominique Estival; Steve Cassidy; Karin Verspoor; Andrew MacKinlay; Denis Burnham (OIAF4HLT@COLING, 2014)

Cross-hospital portability of information extraction of cancer staging information. - David Martínez 001; Graham Pitson; Andrew MacKinlay; Lawrence Cavedon (Artif. Intell. Medicine, 2014)

Investigating Public Health Surveillance using Twitter. - Antonio Jimeno-Yepes; Andrew MacKinlay; Bo Han 002 (BioNLP@IJCNLP, 2015)

Identification and Analysis of Medical Entity Co-occurrences in Twitter. - Andrew MacKinlay; Antonio Jimeno-Yepes; Bo Han 002 (DTMBIO@CIKM, 2015)

Identifying Diseases, Drugs, and Symptoms in Twitter. - Antonio Jimeno-Yepes; Andrew MacKinlay; Bo Han 002; Qiang Chen (MedInfo, 2015)

Optimizing graph-based patterns to extract biomedical events from the literature. - Haibin Liu; Karin Verspoor; Donald C. Comeau; Andrew D. MacKinlay; W. John Wilbur (BMC Bioinform., 2015)

Temporal Modelling of Geospatial Words in Twitter. - Bo Han 002; Antonio Jimeno-Yepes; Andrew MacKinlay; Lianhua Chi (ALTA, 2016)

Syndromic Surveillance using Generic Medical Entities on Twitter. - Pin Huang; Andrew MacKinlay; Antonio Jimeno-Yepes (ALTA, 2016)

NER for Medical Entities in Twitter using Sequence to Sequence Neural Networks. - Antonio Jimeno-Yepes; Andrew MacKinlay (ALTA, 2016)

Detection of adverse drug reactions using medical named entities on Twitter. - Andrew MacKinlay; Hafsah Aamer; Antonio Jimeno-Yepes (AMIA, 2017)

Named Entity Recognition with Stack Residual LSTM and Trainable Bias Decoding. - Quan Tran; Andrew MacKinlay; Antonio Jimeno-Yepes (IJCNLP(1), 2017)

A hybrid approach for automated mutation annotation of the extended human mutation landscape in scientific literature. - Antonio Jimeno-Yepes; Andrew D. MacKinlay; Natalie Gunn; Christine Schieber; Noel Faux; Matthew Downton; Benjamin Goudey; Richard L. Martin (AMIA, 2018)