Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. - Martin J. Aryee; Andrew E. Jaffe; Héctor Corrada Bravo; Christine Ladd-Acosta; Andrew P. Feinberg; Kasper D. Hansen; Rafael A. Irizarry (Bioinform., 2014)

Arioc: GPU-accelerated alignment of short bisulfite-treated reads. - Richard Wilton; Xin Li; Andrew P. Feinberg; Alexander S. Szalay (Bioinform., 2018)

An information-theoretic approach to the modeling and analysis of whole-genome bisulfite sequencing data. - W. Garrett Jenkinson; Jordi Abante; Andrew P. Feinberg; John Goutsias (BMC Bioinform., 2018)

Ranking genomic features using an information-theoretic measure of epigenetic discordance. - W. Garrett Jenkinson; Jordi Abante; Michael A. Koldobskiy; Andrew P. Feinberg; John Goutsias (BMC Bioinform., 2019)