OGRe: a relational database for comparative analysis of mitochondrial genomes. - Daniel Jameson; Andrew P. Gibson; Cendrine Hudelot; Paul G. Higgs (Nucleic Acids Res., 2003)

Structuring Mined Knowledge for the Support of Hypothesis Generation in Molecular Biology. - Marco Roos; M. Scott Marshall; Andrew P. Gibson; Pieter W. Adriaans (SWAT4LS, 2008)

Structuring and extracting knowledge for the support of hypothesis generation in molecular biology. - Marco Roos; M. Scott Marshall; Andrew P. Gibson; Martijn J. Schuemie; Edgar Meij; Sophia Katrenko; Willem Robert van Hage; Konstantinos Krommydas; Pieter W. Adriaans (BMC Bioinform., 2009)

Towards Computational Evaluation of Evidence for Scientific Assertions with Nanopublications. - Andrew P. Gibson; Jesse C. J. van Dam; Erik A. Schultes; Marco Roos; Barend Mons (SWAT4LS, 2012)

Preserving sequence annotations across reference sequences. - Zuotian Tatum; Marco Roos; Andrew P. Gibson; Peter E. M. Taschner; Mark Thompson 002; Erik A. Schultes; Jeroen F. J. Laros (J. Biomed. Semant., 2014)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)