Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge. - Tara Eicher; Andrew Patt; Esko Kautto; Raghu Machiraju; Ewy A. Mathé; Yan Zhang (BMC Bioinform., 2019)

Profiling Tox21 Bioassay Towards Drug Repurposing for Rare Diseases. - Fang Liu; Yanji Xu; Jaleal Sanjak; Andrew Patt; Ruili Huang; Chunxu Qu; Qian Zhu 003 (AMIA, 2022)

RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes. - John C. Braisted; Andrew Patt; Cole Tindall; Timothy Sheils; Jorge Neyra; Kyle Spencer; Tara Eicher; Ewy A. Mathé (Bioinform., 2023)