Design tools for MPRA experiments. - Andrew R. Ghazi; Edward S. Chen; David M. Henke; Namrata Madan; Leonard C. Edelstein; Chad A. Shaw (Bioinform., 2018)

Bayesian modelling of high-throughput sequencing assays with malacoda. - Andrew R. Ghazi; Xianguo Kong; Edward S. Chen; Leonard C. Edelstein; Chad A. Shaw (PLoS Comput. Biol., 2020)

High-sensitivity pattern discovery in large, paired multiomic datasets. - Andrew R. Ghazi; Kathleen Sucipto; Ali Rahnavard; Eric A. Franzosa; Lauren J. McIver; Jason Lloyd-Price; Emma H. Schwager; George Weingart; Yo Sup Moon; Xochitl C. Morgan; Levi Waldron; Curtis Huttenhower (Bioinform., 2022)

Learning and teaching biological data science in the Bioconductor community. - Jenny Drnevich; Frederick J. Tan; Fabricio Almeida-Silva; Robert Castelo; Aedín C. Culhane; Sean R. Davis; Maria A. Doyle; Ludwig Geistlinger; Andrew R. Ghazi; Susan P. Holmes; Leo Lahti; Alexandru Mahmoud; et al. (PLoS Comput. Biol., 2025)