A Combinatorial Approach to the Double Cosets of the Symmetric Group with respect to Young Subgroups. - Andrew R. Jones (Eur. J. Comb., 1996)

An object model and database for functional genomics. - Andrew R. Jones; Ela Hunt; Jonathan M. Wastling; Angel D. Pizarro; Christian J. Stoeckert Jr. (Bioinform., 2004)

An analysis of extensible modelling for functional genomics data. - Andrew R. Jones; Norman W. Paton (BMC Bioinform., 2005)

Data Access and Integration in the ISPIDER Proteomics Grid. - Lucas Zamboulis; Hao Fan 001; Khalid Belhajjame; Jennifer A. Siepen; Andrew R. Jones; Nigel J. Martin 001; Alexandra Poulovassilis; Simon J. Hubbard; Suzanne M. Embury; Norman W. Paton (DILS, 2006)

Pride Wizard: generation of standards compliant quantitative proteomics data. - Neil Swainston; Jennifer A. Siepen; Andrew R. Jones; Sarah R. Hart; Henning Hermjakob; Philip Jones; Simon J. Hubbard (BMC Syst. Biol., 2007)

A toolkit for capturing and sharing FuGE experiments. - Khalid Belhajjame; Andrew R. Jones; Norman W. Paton (Bioinform., 2008)

FuGEFlow: data model and markup language for flow cytometry. - Yu Qian; Olga Tchuvatkina; Josef Spidlen; Peter Wilkinson; Maura Gasparetto; Andrew R. Jones; Frank J. Manion; Richard H. Scheuermann; Rafick-Pierre Sekaly; Ryan Remy Brinkman (BMC Bioinform., 2009)

An Introduction to Proteome Bioinformatics. - Andrew R. Jones; Simon J. Hubbard (Proteome Bioinformatics, 2010)

Managing Experimental Data Using FuGE. - Andrew R. Jones; Allyson L. Lister (Proteome Bioinformatics, 2010)

Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. - Faviel F. Gonzalez-Galarza; Stephen Christmas; Derek Middleton; Andrew R. Jones (Nucleic Acids Res., 2011)

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary. - Gerhard Mayer; Luisa Montecchi-Palazzi; David Ovelleiro; Andrew R. Jones; Pierre-Alain Binz; Eric W. Deutsch; Matthew Chambers; Marius Kallhardt; Fredrik Levander; James Shofstahl; Sandra E. Orchard; Juan Antonio Vizcaíno; et al. (Database J. Biol. Databases Curation, 2013)

A database for curating the associations between killer cell immunoglobulin-like receptors and diseases in worldwide populations. - Louise Y. C. Takeshita; Faviel F. Gonzalez-Galarza; Eduardo José Melo dos Santos; Maria Helena Thomaz Maia; Mushome M. Rahman; Syed M. S. Zain; Derek Middleton; Andrew R. Jones (Database J. Biol. Databases Curation, 2013)

Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites. - Achchuthan Shanmugasundram; Faviel F. Gonzalez-Galarza; Jonathan M. Wastling; Olga Vasieva; Andrew R. Jones (Nucleic Acids Res., 2013)

An integrated approach to understand apicomplexan metabolism from their genomes. - Achchuthan Shanmugasundram; Faviel F. Gonzalez-Galarza; Jonathan M. Wastling; Olga Vasieva; Andrew R. Jones (BMC Bioinform., 2014)

Development of data representation standards by the human proteome organization proteomics standards initiative. - Eric W. Deutsch; Juan P. Albar; Pierre-Alain Binz; Martin Eisenacher; Andrew R. Jones; Gerhard Mayer; Gilbert S. Omenn; Sandra E. Orchard; Juan Antonio Vizcaíno; Henning Hermjakob (J. Am. Medical Informatics Assoc., 2015)

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations. - Faviel F. Gonzalez-Galarza; Louise Y. C. Takeshita; Eduardo José Melo dos Santos; Felicity Kempson; Maria Helena Thomaz Maia; Andrea Luciana Soares da Silva; André Luiz Teles e Silva; Gurpreet S. Ghattaoraya; Ana Alfirevic; Andrew R. Jones; Derek Middleton (Nucleic Acids Res., 2015)

Chapter 15. Proteogenomics: Proteomics for Genome Annotation. - Fawaz Ghali; Andrew R. Jones (Proteome Informatics, 2016)

Chapter 5. Protein Inference and Grouping. - Andrew R. Jones (Proteome Informatics, 2016)

Chapter 11. Data Formats of the Proteomics Standards Initiative. - Juan Antonio Vizcaíno; Simon Perkins; Andrew R. Jones; Eric W. Deutsch (Proteome Informatics, 2016)

A web resource for mining HLA associations with adverse drug reactions: HLA-ADR. - Gurpreet S. Ghattaoraya; Yenal Dundar; Faviel F. Gonzalez-Galarza; Maria Helena Thomaz Maia; Eduardo José Melo dos Santos; Andrea Luciana Soares da Silva; Antony McCabe; Derek Middleton; Ana Alfirevic; Rumona Dickson; Andrew R. Jones (Database J. Biol. Databases Curation, 2016)

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools. - Faviel F. Gonzalez-Galarza; Antony McCabe; Eduardo José Melo dos Santos; James Jones; Louise Y. C. Takeshita; Nestor D. Ortega-Rivera; Glenda M. Del Cid-Pavon; Kerry Ramsbottom; Gurpreet S. Ghattaoraya; Ana Alfirevic; Derek Middleton; Andrew R. Jones (Nucleic Acids Res., 2020)

An OMICs-based meta-analysis to support infection state stratification. - Ashleigh C. Myall; Simon Perkins; David Rushton; Jonathan David; Phillippa Spencer; Andrew R. Jones; Philipp Antczak (Bioinform., 2021)

MHCVision: estimation of global and local false discovery rate for MHC class I peptide binding prediction. - Phorutai Pearngam; Sira Sriswasdi; Trairak Pisitkun; Andrew R. Jones (Bioinform., 2021)

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. - Beatrice Amos; Cristina Aurrecoechea; Matthieu Barba; Ana Barreto; Evelina Y. Basenko; Wojciech Bazant; Robert Belnap; Ann S. Blevins; Ulrike Böhme; John Brestelli; Brian P. Brunk; Mark J. Caddick; et al. (Nucleic Acids Res., 2022)

Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. - Shengbo Wang; David García-Seisdedos; Ananth Prakash; Deepti Jaiswal Kundu; Andrew Collins 003; Nancy George; Silvie Fexova; Pablo A. Moreno; Irene Papatheodorou; Andrew R. Jones; Juan Antonio Vizcaíno (PLoS Comput. Biol., 2022)