Long-Range Periodic Patterns in Microbial Genomes Indicate Significant Multi-Scale Chromosomal Organization. - Timothy E. Allen; Nathan D. Price 001; Andrew R. Joyce; Bernhard Ø. Palsson (PLoS Comput. Biol., 2006)

Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems. - Erwin P. Gianchandani; Jason A. Papin; Nathan D. Price 001; Andrew R. Joyce; Bernhard Ø. Palsson (PLoS Comput. Biol., 2006)

Functional States of the Genome-Scale Escherichia Coli Transcriptional Regulatory System. - Erwin P. Gianchandani; Andrew R. Joyce; Bernhard O. Palsson; Jason A. Papin (PLoS Comput. Biol., 2009)

A statistical method for excluding non-variable CpG sites in high-throughput DNA methylation profiling. - Hailong Meng; Andrew R. Joyce; Daniel E. Adkins; Priyadarshi Basu; Yankai Jia; Guoya Li; Tapas K. Sengupta; Barbara K. Zedler; Edward Lenn Murrelle; Edwin J. C. G. van den Oord (BMC Bioinform., 2010)