Cluster Analyzer for Transcription Sites (CATS): a C++-based program for identifying clustered transcription factor binding sites. - Han Yu; Andrew S. Yoo; Iva Greenwald (Bioinform., 2004)

LONGO: an R package for interactive gene length dependent analysis for neuronal identity. - Matthew J. McCoy; Alexander J. Paul; Matheus B. Victor; Michelle Richner; Harrison W. Gabel; Haijun Gong; Andrew S. Yoo; Tae-Hyuk Ahn (Bioinform., 2018)