MP-PIPE: a massively parallel protein-protein interaction prediction engine. - Andrew Schoenrock; Frank K. H. A. Dehne; James R. Green; Ashkan Golshani; Sylvain Pitre (ICS, 2011)

Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences. - Adam Amos-Binks; Catalin Patulea; Sylvain Pitre; Andrew Schoenrock; Yuan Gui; James R. Green; Ashkan Golshani; Frank K. H. A. Dehne (BMC Bioinform., 2011)

Parallel Macro Pipelining on the Intel SCC Many-Core Computer. - Tim Süß; Andrew Schoenrock; Sebastian Meisner; Christian Plessl (IPDPS Workshops, 2013)

Efficient prediction of human protein-protein interactions at a global scale. - Andrew Schoenrock; Bahram Samanfar; Sylvain Pitre; Mohsen Hooshyar; Ke Jin; Charles A. Phillips; Hui Wang; Sadhna Phanse; Katayoun Omidi; Yuan Gui; Md Alamgir; Alex Wong 003; et al. (BMC Bioinform., 2014)

Engineering inhibitory proteins with InSiPS: the in-silico protein synthesizer. - Andrew Schoenrock; Daniel J. Burnside; Houman Moteshareie; Alex Wong 003; Ashkan Golshani; Frank Dehne (SC, 2015)

Designing anti-Zika virus peptides derived from predicted human-Zika virus protein-protein interactions. - Tom Kazmirchuk; Kevin Dick; Daniel J. Burnside; Brad Barnes; Houman Moteshareie; Maryam Hajikarimlou; Katayoun Omidi; Duale Ahmed; Andrew Low; Clara Lettl; Mohsen Hooshyar; Andrew Schoenrock; et al. (Comput. Biol. Chem., 2017)

Insights into the suitability of utilizing brown rats (Rattus norvegicus) as a model for healing spinal cord injury with epidermal growth factor and fibroblast growth factor-II by predicting protein-protein interactions. - Nashira Grigg; Andrew Schoenrock; Kevin Dick; James R. Green; Ashkan Golshani; Alex Wong 003; Frank Dehne; Eve C. Tsai; Kyle K. Biggar (Comput. Biol. Medicine, 2019)