oPOSSUM: integrated tools for analysis of regulatory motif over-representation. - Shannan J. Ho Sui; Debra L. Fulton; David J. Arenillas; Andrew T. Kwon; Wyeth W. Wasserman (Nucleic Acids Res., 2007)

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. - Elodie Portales-Casamar; Supat Thongjuea; Andrew T. Kwon; David J. Arenillas; Xiaobei Zhao; Eivind Valen; Dimas Yusuf; Boris Lenhard; Wyeth W. Wasserman; Albin Sandelin (Nucleic Acids Res., 2010)

Validation of Skeletal Muscle cis-Regulatory Module Predictions Reveals Nucleotide Composition Bias in Functional Enhancers. - Andrew T. Kwon; Alice Yi Chou; David J. Arenillas; Wyeth W. Wasserman (PLoS Comput. Biol., 2011)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)