Harnessing parallelism in multicore clusters with the All-Pairs, Wavefront, and Makeflow abstractions. - Li Yu; Christopher Moretti; Andrew Thrasher; Scott J. Emrich; Kenneth Judd; Douglas Thain (Clust. Comput., 2010)

Shifting the bioinformatics computing paradigm: A case study in parallelizing genome annotation using MAKER and Work Queue. - Andrew Thrasher; Douglas Thain; Scott J. Emrich; Zachary Musgrave (ICCABS, 2012)

Scripting distributed scientific workflows using Weaver. - Peter Bui; Li Yu; Andrew Thrasher; Rory Carmichael; Irena Lanc; Patrick Donnelly; Douglas Thain (Concurr. Comput. Pract. Exp., 2012)

A Framework for Scalable Genome Assembly on Clusters, Clouds, and Grids. - Christopher Moretti; Andrew Thrasher; Li Yu; Michael Olson; Scott J. Emrich; Douglas Thain (IEEE Trans. Parallel Distributed Syst., 2012)

Case Studies in Designing Elastic Applications. - Dinesh Rajan; Andrew Thrasher; Badi Abdul-Wahid; Jesús A. Izaguirre; Scott J. Emrich; Douglas Thain (CCGRID, 2013)

Scaling up genome annotation using MAKER and work queue. - Andrew Thrasher; Zachary Musgrave; Brian Kachmarck; Douglas Thain; Scott J. Emrich (Int. J. Bioinform. Res. Appl., 2014)