Data bank homology search algorithm with linear computation complexity. - Victor B. Strelets; Andrey A. Ptitsyn; Luciano Milanesi; Hwa A. Lim (Comput. Appl. Biosci., 1994)

Object-oriented data handler for sequence analysis software development. - Andrey A. Ptitsyn; Dmitry A. Grigorovich (Comput. Appl. Biosci., 1995)

A genetic algorithm for designing gene family-specific oligonucleotide sets used for hybridization: the G protein-coupled receptor protein superfamily. - Alexander E. Kel; Andrey A. Ptitsyn; Vladimir N. Babenko; Sebastian Meier-Ewert; Hans Lehrach (Bioinform., 1998)

CLU: A new algorithm for EST clustering. - Andrey A. Ptitsyn; Winston Hide (BMC Bioinform., 2005)

Proceedings of the Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. - Jonathan D. Wren; Yuriy Gusev; Andrey A. Ptitsyn; Stephen Winters-Hilt (BMC Bioinform., 2006)

Circadian Clocks Are Resounding in Peripheral Tissues. - Andrey A. Ptitsyn; Sanjin Zvonic; Steven A. Conrad; L. Keith Scott; Randall L. Mynatt; Jeffrey M. Gimble (PLoS Comput. Biol., 2006)

Analysis of circadian pattern reveals tissue-specific alternative transcription in leptin signaling pathway. - Andrey A. Ptitsyn; Jeffrey M. Gimble (BMC Bioinform., 2007)

Permutation test for periodicity in short time series data. - Andrey A. Ptitsyn; Sanjin Zvonic; Jeffrey M. Gimble (BMC Bioinform., 2007)

Digital Signal Processing Reveals Circadian Baseline Oscillation in Majority of Mammalian Genes. - Andrey A. Ptitsyn; Sanjin Zvonic; Jeffrey M. Gimble (PLoS Comput. Biol., 2007)

Comprehensive analysis of circadian periodic pattern in plant transcriptome. - Andrey A. Ptitsyn (BMC Bioinform., 2008)

Systems biology approach to identification of biomarkers for metastatic progression in cancer. - Andrey A. Ptitsyn; Michael M. Weil; Douglas H. Thamm (BMC Bioinform., 2008)

Computational analysis of gene expression space associated with metastatic cancer. - Andrey A. Ptitsyn (BMC Bioinform., 2009)

Transformation of metabolism with age and lifestyle in Antarctic seals: a case study of systems biology approach to cross-species microarray experiment. - Andrey A. Ptitsyn; Amber Schlater; Shane Kanatous (BMC Syst. Biol., 2010)

Computational workflow for analysis of gain and loss of genes in distantly related genomes. - Andrey A. Ptitsyn; Leonid L. Moroz (BMC Bioinform., 2012)

The ctenophore genome and the evolutionary origins of neural systems Open. - Leonid L. Moroz; Kevin M. Kocot; Mathew R. Citarella; Sohn Dosung; Tigran P. Norekian; Inna S. Povolotskaya; Anastasia P. Grigorenko; Christopher Dailey; Eugene Berezikov; Katherine M. Buckley; Andrey A. Ptitsyn; Denis A. Reshetov; et al. (Nat., 2014)

Optimization of data-intensive next generation sequencing in high performance computing. - Nagarajan Kathiresan; Rashid Al-Ali; Puthen V. Jithesh; Tariq AbuZaid; Ramzi Temanni; Andrey A. Ptitsyn (BIBE, 2015)