AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. - Alexey V. Kochetov; Andrey Palyanov; Igor I. Titov; Dmitry A. Grigorovich; Akinori Sarai; Nikolay A. Kolchanov (BMC Bioinform., 2007)

Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment. - Andrey Palyanov; Sergey Khayrulin; Stephen D. Larson; Alexander Dibert (Silico Biol., 2012)

OpenWorm: an open-science approach to modeling Caenorhabditis elegans. - Balazs Szigeti; Padraig Gleeson; Michael Vella; Sergey Khayrulin; Andrey Palyanov; Jim Hokanson; Michael Currie; Matteo Cantarelli; Giovanni Idili; Stephen D. Larson (Frontiers Comput. Neurosci., 2014)

Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue. - Andrey Palyanov; Sergey Khayrulin; Stephen D. Larson (Adv. Eng. Softw., 2016)

From decision to action: Detailed modelling of frog tadpoles reveals neuronal mechanisms of decision-making and reproduces unpredictable swimming movements in response to sensory signals. - Andrea Ferrario; Andrey Palyanov; Stella Koutsikou; Wen-Chang Li; Stephen R. Soffe; Alan Roberts; Roman Borisyuk (PLoS Comput. Biol., 2021)