Topic Modeling as a Method of Educational Text Structuring. - Andrey Sakhovskiy; Elena Tutubalina; Valery D. Solovyev; Marina Solnyshkina (DeSE, 2020)

KFU NLP Team at SMM4H 2020 Tasks: Cross-lingual Transfer Learning with Pretrained Language Models for Drug Reactions. - Zulfat Miftahutdinov; Andrey Sakhovskiy; Elena Tutubalina (SMM4H@COLING, 2020)

KFU NLP Team at SMM4H 2021 Tasks: Cross-lingual and Cross-modal BERT-based Models for Adverse Drug Effects. - Andrey Sakhovskiy; Zulfat Miftahutdinov; Elena Tutubalina (SMM4H@NAACL-HLT, 2021)

The Russian Drug Reaction Corpus and neural models for drug reactions and effectiveness detection in user reviews. - Elena Tutubalina; Ilseyar Alimova; Zulfat Miftahutdinov; Andrey Sakhovskiy; Valentin Malykh; Sergey I. Nikolenko (Bioinform., 2021)

Multimodal model with text and drug embeddings for adverse drug reaction classification. - Andrey Sakhovskiy; Elena Tutubalina (J. Biomed. Informatics, 2022)

Graph-Enriched Biomedical Entity Representation Transformer. - Andrey Sakhovskiy; Natalia Semenova; Artur Kadurin; Elena Tutubalina (CLEF, 2023)

Cross-Lingual Transfer Learning in Drug-Related Information Extraction from User-Generated Texts. - Andrey Sakhovskiy; Elena Tutubalina (Program. Comput. Softw., 2023)

Biomedical Concept Normalization over Nested Entities with Partial UMLS Terminology in Russian. - Natalia V. Loukachevitch; Andrey Sakhovskiy; Elena Tutubalina (LREC/COLING, 2024)

Lost in Translation: Chemical Language Models and the Misunderstanding of Molecule Structures. - Veronika Ganeeva; Andrey Sakhovskiy; Kuzma Khrabrov; Andrey V. Savchenko; Artur Kadurin; Elena Tutubalina (EMNLP (Findings), 2024)

Biomedical Entity Representation with Graph-Augmented Multi-Objective Transformer. - Andrey Sakhovskiy; Natalia Semenova; Artur Kadurin; Elena Tutubalina (NAACL-HLT (Findings), 2024)

Overview of BioASQ 2025: The Thirteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. - Anastasios Nentidis; Georgios Katsimpras; Anastasia Krithara; Martin Krallinger; Miguel Rodríguez-Ortega; Eduard Rodriguez-López; Natalia V. Loukachevitch; Andrey Sakhovskiy; Elena Tutubalina; Dimitris Dimitriadis; Grigorios Tsoumakas; George Giannakoulas; et al. (CLEF, 2025)

BioASQ at CLEF2025: The Thirteenth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge. - Anastasios Nentidis; Georgios Katsimpras; Anastasia Krithara; Martin Krallinger; Miguel Rodríguez-Ortega; Natalia V. Loukachevitch; Andrey Sakhovskiy; Elena Tutubalina; Grigorios Tsoumakas; George Giannakoulas; Alexandra Bekiaridou; Athanasios Samaras; et al. (ECIR (5), 2025)

ShortPathQA: A Dataset for Controllable Fusion of Large Language Models with Knowledge Graphs. - Mikhail Salnikov; Andrey Sakhovskiy; Irina Nikishina; Aida Usmanova; Angelie Kraft; Cedric Möller; Debayan Banerjee; Junbo Huang; Longquan Jiang 001; Rana Abdullah; Xi Yan 001; Elena Tutubalina; et al. (NLDB (1), 2025)

BALI: Enhancing Biomedical Language Representations through Knowledge Graph and Language Model Alignment. - Andrey Sakhovskiy; Elena Tutubalina (SIGIR, 2025)

RuCCoD: Towards Automated ICD Coding in Russian. - Aleksandr Nesterov; Andrey Sakhovskiy; Ivan Sviridov; Airat Valiev; Vladimir Makharev; Petr Anokhin; Galina Zubkova; Elena Tutubalina (CoRR, 2025)