Initial Large-scale Exploration of Protein-protein Interactions in Human Brain. - Jake Yue Chen; Andrey Y. Sivachenko; Russell Bell; Cornelia Kurschner; Irene Ota; Sudhir Sahasrabudhe (CSB, 2003)

High-throughput Protein Interactome Data: Minable or Not? - Jake Yue Chen; Andrey Y. Sivachenko; Lang Li 001 (BIOKDD, 2004)

Identifying Local Gene Expression Patterns in Biomolecular Networks. - Andrey Y. Sivachenko; Anton Yuryev; Nikolai Daraselia; Ilya Mazo (CSB Workshops, 2005)

Mining Alzheimer Disease Relevant Proteins from Integrated Protein Interactome Data. - Jake Yue Chen; Changyu Shen; Andrey Y. Sivachenko (Pacific Symposium on Biocomputing, 2006)

Molecular Networks in microarray Analysis. - Andrey Y. Sivachenko; Anton Yuryev; Nikolai Daraselia; Ilya Mazo (J. Bioinform. Comput. Biol., 2007)

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining. - Tianxiao Huan; Andrey Y. Sivachenko; Scott H. Harrison; Jake Yue Chen (BMC Bioinform., 2008)