clDice - a Topology-Preserving Loss Function for Tubular Structure Segmentation. - Suprosanna Shit; Johannes C. Paetzold; Anjany Sekuboyina; Andrey Zhylka; Ivan Ezhov; Alexander Unger; Josien P. W. Pluim; Giles Tetteh; Bjoern H. Menze (CoRR, 2020)

clDice - A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation. - Suprosanna Shit; Johannes C. Paetzold; Anjany Sekuboyina; Ivan Ezhov; Alexander Unger; Andrey Zhylka; Josien P. W. Pluim; Ulrich Bauer; Bjoern H. Menze (CVPR, 2021)

Virtual brain grafting: Enabling whole brain parcellation in the presence of large lesions. - Ahmed M. Radwan; Louise Emsell; Jeroen Blommaert; Andrey Zhylka; Silvia Kovacs; Tom Theys; Nico Sollmann; Patrick Dupont; Stefan Sunaert (NeuroImage, 2021)

Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. - Chiara Maffei; Gabriel Girard; Kurt G. Schilling; Dogu Baran Aydogan; Nagesh Adluru; Andrey Zhylka; Ye Wu 001; Matteo Mancini; Andac Hamamci; Alessia Sarica; Achille Teillac; Steven H. Baete; et al. (NeuroImage, 2022)

PIVOTS: Aligning unseen Structures using Preoperative to Intraoperative Volume-To-Surface Registration for Liver Navigation. - Peng Liu; Bianca Güttner; Yutong Su; Chenyang Li; Jinjing Xu; Mingyang Liu; Zhe Min; Andrey Zhylka; Jasper N. Smit; Karin Olthof; Matteo Fusaglia; Rudi Apolle; et al. (CoRR, 2025)