Missing channels in two-colour microarray experiments: Combining single-channel and two-channel data. - Andy G. Lynch; David E. Neal; John D. Kelly; Glyn J. Burtt; Natalie P. Thorne (BMC Bioinform., 2007)

BASH: a tool for managing BeadArray spatial artefacts. - Jonathan M. Cairns; Mark J. Dunning; Matthew E. Ritchie; Roslin Russell; Andy G. Lynch (Bioinform., 2008)

Statistical issues in the analysis of Illumina data. - Mark J. Dunning; Nuno L. Barbosa-Morais; Andy G. Lynch; Simon Tavaré; Matthew E. Ritchie (BMC Bioinform., 2008)

BayesPeak: Bayesian analysis of ChIP-seq data. - Christiana Spyrou; Rory Stark; Andy G. Lynch; Simon Tavaré (BMC Bioinform., 2009)

Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data. - Mike L. Smith; Mark J. Dunning; Simon Tavaré; Andy G. Lynch (BMC Bioinform., 2010)

BayesPeak - an R package for analysing ChIP-seq data. - Jonathan M. Cairns; Christiana Spyrou; Rory Stark; Mike L. Smith; Andy G. Lynch; Simon Tavaré (Bioinform., 2011)

BeadArray Expression Analysis Using Bioconductor. - Matthew E. Ritchie; Mark J. Dunning; Mike L. Smith; Wei Shi; Andy G. Lynch (PLoS Comput. Biol., 2011)

Crambled: A Shiny application to enable intuitive resolution of conflicting cellularity estimates. - Andy G. Lynch (F1000Research, 2015)

Decomposition of mutational context signatures using quadratic programming methods. - Andy G. Lynch (F1000Research, 2016)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)