Analysis for co-occurring sequence features identifies link between common synonymous variant and an early-terminated NPC1 isoform. - Mercedeh Movassagh; Prakriti Mudvari; Maria Kokkinaki; Nathan J. Edwards; Nady Golestaneh; Anelia Horvath (J. Clin. Bioinform., 2014)

SNPlice: variants that modulate Intron retention from RNA-sequencing data. - Prakriti Mudvari; Mercedeh Movassagh; Kamran Kowsari; Ali Seyfi; Maria Kokkinaki; Nathan J. Edwards; Nady Golestaneh; Anelia Horvath (Bioinform., 2015)

ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data. - Liam F. Spurr; Nawaf Alomran; Pavlos Bousounis; Dacian Reece-Stremtan; N. M. Prashant; Hongyu Liu; Piotr Slowinski; Muzi Li; Qianqian Zhang; Justin Sein; Gabriel Asher; Keith A. Crandall; et al. (Bioinform., 2020)

SCExecute: custom cell barcode-stratified analyses of scRNA-seq data. - Nathan Edwards; Christian Dillard; N. M. Prashant; Liu Hongyu; Mia Yang; Evgenia Ulianova; Anelia Horvath (Bioinform., 2023)