Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction. - Elin Teppa; Angela D. Wilkins; Morten Nielsen 001; Cristina Marino Buslje (BMC Bioinform., 2012)

Accounting for epistatic interactions improves the functional analysis of protein structures. - Angela D. Wilkins; Eric Venner; David C. Marciano; Serkan Erdin; Benu Atri; Rhonald C. Lua; Olivier Lichtarge (Bioinform., 2013)

Automated hypothesis generation based on mining scientific literature. - W. Scott Spangler; Angela D. Wilkins; Benjamin J. Bachman; Meena Nagarajan; Tajhal Dayaram; Peter J. Haas; Sam Regenbogen; Curtis R. Pickering; Austin Comer; Jeffrey N. Myers; Ioana Stanoi; Linda Kato; et al. (KDD, 2014)

Predicting Future Scientific Discoveries Based on a Networked Analysis of the Past Literature. - Meenakshi Nagarajan; Angela D. Wilkins; Benjamin J. Bachman; Ilya B. Novikov; Shenghua Bao; Peter J. Haas; María E. Terrón-Díaz; Sumit Bhatia; Anbu K. Adikesavan; Jacques J. Labrie; Sam Regenbogen; Christie M. Buchovecky; et al. (KDD, 2015)

Computing Therapy for Precision Medicine: Collaborative Filtering Integrates and Predicts Multi-entity Interactions. - Sam Regenbogen; Angela D. Wilkins; Olivier Lichtarge (PSB, 2016)

UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures. - Rhonald C. Lua; Stephen J. Wilson; Daniel M. Konecki; Angela D. Wilkins; Eric Venner; Daniel H. Morgan; Olivier Lichtarge (Nucleic Acids Res., 2016)

Human Kinases Display Mutational Hotspots at Cognate Positions Within Cancer. - Jonathan Gallion; Angela D. Wilkins; Olivier Lichtarge (PSB, 2017)

Discovery of Functional and Disease Pathways by Community Detection in Protein-Protein Interaction Networks. - Stephen J. Wilson; Angela D. Wilkins; Chih-Hsu Lin; Rhonald C. Lua; Olivier Lichtarge (PSB, 2017)

Multimodal network diffusion predicts future disease-gene-chemical associations. - Chih-Hsu Lin; Daniel M. Konecki; Meng Liu 027; Stephen J. Wilson; Huda Nassar; Angela D. Wilkins; David F. Gleich; Olivier Lichtarge (Bioinform., 2019)

An Evolutionary Trace method defines functionally important bases and sites common to RNA families. - Ilya B. Novikov; Angela D. Wilkins; Olivier Lichtarge (PLoS Comput. Biol., 2020)