FIRM: Flexible integration of single-cell RNA-sequencing data for large-scale multi-tissue cell atlas datasets. - Jingsi Ming; Zhixiang Lin; Jia Zhao; Xiang Wan; Tabula Microcebus Consortium; Can Yang 002; Angela Ruohao Wu (Briefings Bioinform., 2022)

Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets. - Jia Zhao; Gefei Wang; Jingsi Ming; Zhixiang Lin; Yang Wang; Snigdha Agarwal; Aditi Agrawal; Ahmad Al-Moujahed; Alina Alam; Megan A. Albertelli; Paul Allegakoen; Thomas Ambrosi; et al. (Nat. Comput. Sci., 2022)

Construction of a 3D whole organism spatial atlas by joint modelling of multiple slices with deep neural networks. - Gefei Wang; Jia Zhao; Yan Yan; Yang Wang; Angela Ruohao Wu; Can Yang 002 (Nat. Mac. Intell., 2023)