Detecting short tandem repeats from genome data: opening the software black box. - Angelika Merkel; Neil J. Gemmell (Briefings Bioinform., 2008)

Grape RNA-Seq analysis pipeline environment. - David G. Knowles; Maik Röder; Angelika Merkel; Roderic Guigó (Bioinform., 2013)

gemBS: high throughput processing for DNA methylation data from bisulfite sequencing. - Angelika Merkel; Marcos Fernández-Callejo; Eloi Casals; Santiago Marco-Sola; Ronald P. Schuyler; Ivo Glynne Gut; Simon C. Heath (Bioinform., 2019)

Refinement of computational identification of somatic copy number alterations using DNA methylation microarrays illustrated in cancers of unknown primary. - Pedro Blecua; Veronica Davalos; Izar de Villasante; Angelika Merkel; Eva Musulen; Laia Coll-Sanmartin; Manel Esteller (Briefings Bioinform., 2022)