HELM: searching for helix motifs within protein sequences. - Angelo M. Facchiano (Bioinform., 2000)

Active Sequences Collection (ASC) database: a new tool to assign functions to protein sequences. - Angelo M. Facchiano; Antonio Facchiano; Francesco Facchiano (Nucleic Acids Res., 2003)

Simulation of conformational changes occurring when a protein interacts with its receptor. - Susan Costantini; Giovanni Colonna; Angelo M. Facchiano (Comput. Biol. Chem., 2007)

PreSSAPro: A software for the prediction of secondary structure by amino acid properties. - Susan Costantini; Giovanni Colonna; Angelo M. Facchiano (Comput. Biol. Chem., 2007)

FASMA: A Service to Format and Analyze Sequences in Multiple Alignments. - Susan Costantini; Giovanni Colonna; Angelo M. Facchiano (Genom. Proteom. Bioinform., 2007)

New computational strategy to analyze the interactions of ER alpha and ER beta with different ERE sequences. - Anna Marabotti; Giovanni Colonna; Angelo M. Facchiano (J. Comput. Chem., 2007)

A Machine Learning Approach to Mass Spectra Classification with Unsupervised Feature Selection. - Michele Ceccarelli; Antonio d'Acierno; Angelo M. Facchiano (CIBB, 2008)

Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells. - Margherita Mutarelli; Luigi Cicatiello; Lorenzo Ferraro; Olì M. V. Grober; Maria Ravo; Angelo M. Facchiano; Claudia Angelini; Alessandro Weisz (BMC Bioinform., 2008)

Understanding the role of the topology in protein folding by computational inverse folding experiments. - Antonio Mucherino; Susan Costantini; Daniela di Serafino; Marco D'Apuzzo; Angelo M. Facchiano; Giovanni Colonna (Comput. Biol. Chem., 2008)

Energy-based prediction of amino acid-nucleotide base recognition. - Anna Marabotti; Francesca Spyrakis; Angelo M. Facchiano; Pietro Cozzini; Saverio Alberti; Glen E. Kellogg; Andrea Mozzarelli (J. Comput. Chem., 2008)

A scale space approach for unsupervised feature selection in mass spectra classification for ovarian cancer detection. - Michele Ceccarelli; Antonio d'Acierno; Angelo M. Facchiano (BMC Bioinform., 2009)

GALT Protein Database, a Bioinformatics Resource for the Management and Analysis of Structural Features of a Galactosemia-related Protein and Its Mutants. - Antonio d'Acierno; Angelo M. Facchiano; Anna Marabotti (Genom. Proteom. Bioinform., 2009)

The misuse of terms in scientific literature. - Anna Marabotti; Angelo M. Facchiano (Bioinform., 2010)

A Computational Strategy to Investigate Relevant Similarities between Virus and Human Proteins - Local High Similarities between Herpes and Human Proteins. - Anna Marabotti; Corrado Cirielli; Daniela Agnese D'Arcangelo; Claudia Giampietri; Francesco Facchiano; Angelo M. Facchiano; Antonio Facchiano (BIOINFORMATICS, 2011)

Solving Biclustering with a GRASP-Like Metaheuristic: Two Case-Studies on Gene Expression Analysis. - Angelo M. Facchiano; Paola Festa; Anna Marabotti; Luciano Milanesi; Francesco Musacchia (CIBB, 2011)

Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian Society of Bioinformatics. - Carmela Gissi; Paolo Romano 001; Alfredo Ferro; Rosalba Giugno; Alfredo Pulvirenti; Angelo M. Facchiano; Manuela Helmer-Citterich (BMC Bioinform., 2013)

Statistical Analysis of Protein Structural Features: Relationships and PCA Grouping. - Eugenio Del Prete; Serena Dotolo; Anna Marabotti; Angelo M. Facchiano (CIBB, 2014)

Comparative Analysis of MALDI-TOF Mass Spectrometric Data in Proteomics: A Case Study. - Eugenio Del Prete; Diego d'Esposito; Maria Fiorella Mazzeo; Rosa Anna Siciliano; Angelo M. Facchiano (CIBB, 2015)

Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics. - Angelo M. Facchiano; Claudia Angelini; Roberta Bosotti; Alessandro Guffanti; Anna Marabotti; Roberto Marangoni; Stefano Pascarella; Paolo Romano 001; Andreas Zanzoni; Manuela Helmer-Citterich (BMC Bioinform., 2015)

Geena 2, improved automated analysis of MALDI/TOF mass spectra. - Paolo Romano 001; Aldo Profumo; Mattia Rocco; Rosa Mangerini; Fabio Ferri; Angelo M. Facchiano (BMC Bioinform., 2016)

A new GRASP metaheuristic for biclustering of gene expression data. - Daniele Ferone; Angelo M. Facchiano; Anna Marabotti; Paola Festa (PeerJ Prepr., 2016)

Feature selection on a dataset of protein families: from exploratory data analysis to statistical variable importance. - Eugenio Del Prete; Serena Dotolo; Anna Marabotti; Angelo M. Facchiano (PeerJ Prepr., 2016)

GALACTOSEMIA Web DB: A web accessible database of Galactosemia related proteins. - Antonio d'Acierno; Angelo M. Facchiano; Anna Marabotti (PeerJ Prepr., 2016)

Pharmacophore modeling, virtual computational screening and biological evaluation studies. - Serena Dotolo; Angelo M. Facchiano (PeerJ Prepr., 2017)

Suitable reporting for the reproducible research: an added value in the analysis of proteomics data. - Eugenio Del Prete; Angelo M. Facchiano; Aldo Profumo; Claudia Angelini; Paolo Romano 001 (PeerJ Prepr., 2017)

Bioinformatics methodologies for coeliac disease and its comorbidities. - Eugenio Del Prete; Angelo M. Facchiano; Pietro Liò (Briefings Bioinform., 2020)

A review on drug repurposing applicable to COVID-19. - Serena Dotolo; Anna Marabotti; Angelo M. Facchiano; Roberto Tagliaferri (Briefings Bioinform., 2021)

A multiple network-based bioinformatics pipeline for the study of molecular mechanisms in oncological diseases for personalized medicine. - Serena Dotolo; Anna Marabotti; Anna Maria Rachiglio; Riziero Esposito Abate; Marco Benedetto; Fortunato Ciardiello; Antonella De Luca; Nicola Normanno; Angelo M. Facchiano; Roberto Tagliaferri (Briefings Bioinform., 2021)

Predicting the stability of mutant proteins by computational approaches: an overview. - Anna Marabotti; Bernardina Scafuri; Angelo M. Facchiano (Briefings Bioinform., 2021)

Performance of Web tools for predicting changes in protein stability caused by mutations. - Anna Marabotti; Eugenio Del Prete; Bernardina Scafuri; Angelo M. Facchiano (BMC Bioinform., 2021)