The ENCODE Project at UC Santa Cruz. - Daryl J. Thomas; Kate R. Rosenbloom; Hiram Clawson; Angie S. Hinrichs; Heather Trumbower; Brian J. Raney; Donna Karolchik; Galt P. Barber; Rachel A. Harte; Jennifer Hillman-Jackson; Robert M. Kuhn; Brooke L. Rhead; et al. (Nucleic Acids Res., 2007)

BigWig and BigBed: enabling browsing of large distributed datasets. - W. James Kent; Ann S. Zweig; Galt P. Barber; Angie S. Hinrichs; Donna Karolchik (Bioinform., 2010)

The UCSC Genome Browser database: update 2010. - Brooke L. Rhead; Donna Karolchik; Robert M. Kuhn; Angie S. Hinrichs; Ann S. Zweig; Pauline A. Fujita; Mark Diekhans; Kayla E. Smith; Kate R. Rosenbloom; Brian J. Raney; Andy Pohl; Michael Pheasant; et al. (Nucleic Acids Res., 2010)

ENCODE whole-genome data in the UCSC Genome Browser. - Kate R. Rosenbloom; Timothy R. Dreszer; Michael Pheasant; Galt P. Barber; Laurence R. Meyer; Andy Pohl; Brian J. Raney; Ting Wang 032; Angie S. Hinrichs; Ann S. Zweig; Pauline A. Fujita; Katrina Learned; et al. (Nucleic Acids Res., 2010)

The UCSC Genome Browser database: update 2011. - Pauline A. Fujita; Brooke L. Rhead; Ann S. Zweig; Angie S. Hinrichs; Donna Karolchik; Melissa S. Cline; Mary Goldman; Galt P. Barber; Hiram Clawson; António Coelho; Mark Diekhans; Timothy R. Dreszer; et al. (Nucleic Acids Res., 2011)

ENCODE whole-genome data in the UCSC genome browser (2011 update). - Brian J. Raney; Melissa S. Cline; Kate R. Rosenbloom; Timothy R. Dreszer; Katrina Learned; Galt P. Barber; Laurence R. Meyer; Cricket A. Sloan; Venkat S. Malladi; Krishna M. Roskin; Bernard B. Suh; Angie S. Hinrichs; et al. (Nucleic Acids Res., 2011)

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes. - Danielle G. Lemay; William F. Martin; Angie S. Hinrichs; Monique Rijnkels; J. Bruce German; Ian Korf; Katherine S. Pollard (BMC Bioinform., 2012)

The UCSC Genome Browser database: extensions and updates 2011. - Timothy R. Dreszer; Donna Karolchik; Ann S. Zweig; Angie S. Hinrichs; Brian J. Raney; Robert M. Kuhn; Laurence R. Meyer; Matthew C. Wong; Cricket A. Sloan; Kate R. Rosenbloom; Greg Roe; Brooke L. Rhead; et al. (Nucleic Acids Res., 2012)

ENCODE whole-genome data in the UCSC Genome Browser: update 2012. - Kate R. Rosenbloom; Timothy R. Dreszer; Jeffrey C. Long; Venkat S. Malladi; Cricket A. Sloan; Brian J. Raney; Melissa S. Cline; Donna Karolchik; Galt P. Barber; Hiram Clawson; Mark Diekhans; Pauline A. Fujita; et al. (Nucleic Acids Res., 2012)

The UCSC Genome Browser database: extensions and updates 2013. - Laurence R. Meyer; Ann S. Zweig; Angie S. Hinrichs; Donna Karolchik; Robert M. Kuhn; Matthew C. Wong; Cricket A. Sloan; Kate R. Rosenbloom; Greg Roe; Brooke L. Rhead; Brian J. Raney; Andy Pohl; et al. (Nucleic Acids Res., 2013)

The UCSC Genome Browser database: 2014 update. - Donna Karolchik; Galt P. Barber; Jonathan Casper; Hiram Clawson; Melissa S. Cline; Mark Diekhans; Timothy R. Dreszer; Pauline A. Fujita; Luvina Guruvadoo; Maximilian Haeussler; Rachel A. Harte; Steven G. Heitner; et al. (Nucleic Acids Res., 2014)

Navigating protected genomics data with UCSC Genome Browser in a Box. - Maximilian Haeussler; Brian J. Raney; Angie S. Hinrichs; Hiram Clawson; Ann S. Zweig; Donna Karolchik; Jonathan Casper; Matthew L. Speir; David Haussler; W. James Kent (Bioinform., 2015)

The UCSC Genome Browser database: 2015 update. - Kate R. Rosenbloom; Joel Armstrong; Galt P. Barber; Jonathan Casper; Hiram Clawson; Mark Diekhans; Timothy R. Dreszer; Pauline A. Fujita; Luvina Guruvadoo; Maximilian Haeussler; Rachel A. Harte; Steven G. Heitner; et al. (Nucleic Acids Res., 2015)

UCSC Data Integrator and Variant Annotation Integrator. - Angie S. Hinrichs; Brian J. Raney; Matthew L. Speir; Brooke L. Rhead; Jonathan Casper; Donna Karolchik; Robert M. Kuhn; Kate R. Rosenbloom; Ann S. Zweig; David Haussler; W. James Kent (Bioinform., 2016)

The UCSC Genome Browser database: 2016 update. - Matthew L. Speir; Ann S. Zweig; Kate R. Rosenbloom; Brian J. Raney; Benedict Paten; Parisa Nejad; Brian T. Lee; Katrina Learned; Donna Karolchik; Angie S. Hinrichs; Steven G. Heitner; Rachel A. Harte; et al. (Nucleic Acids Res., 2016)

The UCSC Genome Browser database: 2017 update. - Cath Tyner; Galt P. Barber; Jonathan Casper; Hiram Clawson; Mark Diekhans; Christopher Eisenhart; Clayton M. Fischer; David Gibson; Jairo Navarro Gonzalez; Luvina Guruvadoo; Maximilian Haeussler; Steven G. Heitner; et al. (Nucleic Acids Res., 2017)

The UCSC Genome Browser database: 2018 update. - Jonathan Casper; Ann S. Zweig; Chris Villarreal; Cath Tyner; Matthew L. Speir; Kate R. Rosenbloom; Brian J. Raney; Christopher M. Lee; Brian T. Lee; Donna Karolchik; Angie S. Hinrichs; Maximilian Haeussler; et al. (Nucleic Acids Res., 2018)

The UCSC Genome Browser database: 2019 update. - Maximilian Haeussler; Ann S. Zweig; Cath Tyner; Matthew L. Speir; Kate R. Rosenbloom; Brian J. Raney; Christopher M. Lee; Brian T. Lee; Angie S. Hinrichs; Jairo Navarro Gonzalez; David Gibson; Mark Diekhans; et al. (Nucleic Acids Res., 2019)

UCSC Genome Browser enters 20th year. - Christopher M. Lee; Galt P. Barber; Jonathan Casper; Hiram Clawson; Mark Diekhans; Jairo Navarro Gonzalez; Angie S. Hinrichs; Brian T. Lee; Luis R. Nassar; Conner C. Powell; Brian J. Raney; Kate R. Rosenbloom; et al. (Nucleic Acids Res., 2020)

The UCSC Genome Browser database: 2021 update. - Jairo Navarro Gonzalez; Ann S. Zweig; Matthew L. Speir; Daniel Schmelter; Kate R. Rosenbloom; Brian J. Raney; Conner C. Powell; Luis R. Nassar; Nathan D. Maulding; Christopher M. Lee; Brian T. Lee; Angie S. Hinrichs; et al. (Nucleic Acids Res., 2021)

matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2. - Cheng Ye; Bryan Thornlow; Angie S. Hinrichs; Alexander Kramer; Cade Mirchandani; Devika Torvi; Robert Lanfear; Russell Corbett-Detig; Yatish Turakhia (Bioinform., 2022)

The UCSC Genome Browser database: 2022 update. - Brian T. Lee; Galt P. Barber; Anna Benet-Pagès; Jonathan Casper; Hiram Clawson; Mark Diekhans; Clayton M. Fischer; Jairo Navarro Gonzalez; Angie S. Hinrichs; Christopher M. Lee; Pranav Muthuraman; Luis R. Nassar; et al. (Nucleic Acids Res., 2022)

The UCSC Genome Browser database: 2023 update. - Luis R. Nassar; Galt P. Barber; Anna Benet-Pagès; Jonathan Casper; Hiram Clawson; Mark Diekhans; Clayton M. Fischer; Jairo Navarro Gonzalez; Angie S. Hinrichs; Brian T. Lee; Christopher M. Lee; Pranav Muthuraman; et al. (Nucleic Acids Res., 2023)