DNA-based parallel computation by "counting". - Mitsunori Ogihara; Animesh Ray (DNA Based Computers, 1997)

Executing parallel logical operations with DNA. - Mitsunori Ogihara; Animesh Ray (CEC, 1999)

Simulating Boolean Circuits on a DNA Computer. - Mitsunori Ogihara; Animesh Ray (Algorithmica, 1999)

Review of DNA Based Computers II edited by Laura F. Landweber and Eric K. Baum. - Mitsunori Ogihara; Animesh Ray (SIGACT News, 1999)

The Minimum-Model DNA Computation on a Sequence of Probe Arrays. - Mitsunori Ogihara; Animesh Ray (UMC, 2002)

PathSys: integrating molecular interaction graphs for systems biology. - Michael Baitaluk; Xufei Qian; Shubhada Godbole; Alpan Raval; Animesh Ray; Amarnath Gupta (BMC Bioinform., 2006)

BiologicalNetworks: visualization and analysis tool for systems biology. - Michael Baitaluk; Mayya Sedova; Animesh Ray; Amarnath Gupta (Nucleic Acids Res., 2006)

A Model for p53 Dynamics Triggered by DNA Damage. - Vijay Chickarmane; Animesh Ray; Herbert M. Sauro; Ali Nadim (SIAM J. Appl. Dyn. Syst., 2007)

Mining protein networks for synthetic genetic interactions. - Sri R. Paladugu; Shan Zhao; Animesh Ray; Alpan Raval (BMC Bioinform., 2008)

Data Mining by Navigation - An Experience with Systems Biology. - Amarnath Gupta; Michael Baitaluk; Animesh Ray; Aditya Bagchi (PReMI, 2009)

BiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies. - Sergey Kozhenkov; Mayya Sedova; Yulia Dubinina; Amarnath Gupta; Animesh Ray; Julia V. Ponomarenko; Michael Baitaluk (BMC Syst. Biol., 2011)

A signature of power law network dynamics. - Ashish Bhan; Animesh Ray (CoRR, 2014)

Machine learning in postgenomic biology and personalized medicine. - Animesh Ray (WIREs Data Mining Knowl. Discov., 2022)

MMTS: Multi-Modal Time Series Based Decision Support System for Ventilator Associated Pneumonia. - Nikki Tiwari; Kolin Paul; Shrawan Kumar Raut; Animesh Ray; Surabhi Vyas; Naveet Wig (IJCNN, 2024)