The creation of a music-driven digital violinist. - Jun Yin; Ankur Dhanik; David Hsu; Ye Wang 007 (ACM Multimedia, 2004)

Haptics of Buckling. - Tim Poston; Ankur Dhanik; Etienne Burdet; Chee Leong Teo (WHC, 2005)

Dynamic Thread for Real-Time Knot-Tying. - Fei Wang 010; Etienne Burdet; Ankur Dhanik; Tim Poston; Chee Leong Teo (WHC, 2005)

On the inverse kinematics of a fragment of protein backbone. - Guanfeng Liu 001; R. James Milgram; Ankur Dhanik; Jean-Claude Latombe (ARK, 2006)

Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. - Ankur Dhanik; Peggy Yao; Nathan Marz; Ryan Propper; Charles Kou; Guanfeng Liu 001; Henry van den Bedem; Jean-Claude Latombe (WABI, 2007)

Modeling Structural Heterogeneity in Proteins from X-Ray Data. - Ankur Dhanik; Henry van den Bedem; Ashley Deacon; Jean-Claude Latombe (WAFR, 2008)

Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. - Peggy Yao; Ankur Dhanik; Nathan Marz; Ryan Propper; Charles Kou; Guanfeng Liu 001; Henry van den Bedem; Jean-Claude Latombe; Inbal Halperin-Landsberg; Russ B. Altman (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

On modeling peptidomimetics in complex with the SH2 domain of Stat3. - Ankur Dhanik; John S. McMurray; Lydia E. Kavraki (EMBC, 2011)

Auto dock-based incremental docking protocol to improve docking of large ligands. - Ankur Dhanik; John S. McMurray; Lydia E. Kavraki (BIBM Workshops, 2012)

In-silico discovery of cancer-specific peptide-HLA complexes for targeted therapy. - Ankur Dhanik; Jessica R. Kirshner; Douglas MacDonald; Gavin Thurston; Hsin C. Lin; Andrew J. Murphy; Wen Zhang (BMC Bioinform., 2016)