RgS-Miner: A Biological Data Warehousing, Analyzing and Mining System for Identifying Transcriptional Regulatory Sites in Human Genome. - Yi-Ming Sun; Hsien-Da Huang; Jorng-Tzong Horng; Shir-Ly Huang; Ann-Ping Tsou (DEXA, 2004)

Identifying Transcriptional Regulatory Sites in the Human Genome Using an Integrated Computation. - Hsien-Da Huang; Jorng-Tzong Horng; Yi-Ming Sun; Ann-Ping Tsou; Shir-Ly Huang (ISPAN, 2004)

Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites. - Hsien-Da Huang; Tzong-Yi Lee; Shih-Wei Tzeng; Li-Cheng Wu; Jorng-Tzong Horng; Ann-Ping Tsou; Kuan-Tsae Huang (J. Comput. Chem., 2005)

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. - Paul Wei-Che Hsu; Hsien-Da Huang; Sheng-Da Hsu; Li-Zen Lin; Ann-Ping Tsou; Ching-Ping Tseng; Peter F. Stadler; Stefan Washietl; Ivo L. Hofacker (Nucleic Acids Res., 2006)

Database to Dynamically Aid Probe Design for Virus Identification. - Feng-Mao Lin; Hsien-Da Huang; Y.-C. Chang; Ann-Ping Tsou; P.-L. Chan; L.-C. Wu; Meng-Feng Tsai; Jorng-Tzong Horng (IEEE Trans. Inf. Technol. Biomed., 2006)

Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data. - Ann-Ping Tsou; Yi-Ming Sun; Chia-Lin Liu; Hsien-Da Huang; Jorng-Tzong Horng; Meng-Feng Tsai; Baw-Jhiune Liu (IEEE Trans. Inf. Technol. Biomed., 2006)

miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. - Sheng-Da Hsu; Chia-Huei Chu; Ann-Ping Tsou; Shu-Jen Chen; Hua-Chien Chen; Paul Wei-Che Hsu; Yung-Hao Wong; Yi-Hsuan Chen; Gian-Hung Chen; Hsien-Da Huang (Nucleic Acids Res., 2008)

miRTarBase: a database curates experimentally validated microRNA-target interactions. - Sheng-Da Hsu; Feng-Mao Lin; Wei-Yun Wu; Chao Liang; Wei-Chih Huang; Wen-Ling Chan; Wen-Ting Tsai; Goun-Zhou Chen; Chia-Jung Lee; Chih-Min Chiu; Chia-Hung Chien; Ming-Chia Wu; et al. (Nucleic Acids Res., 2011)

Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling. - Sheng-Da Hsu; Hsi-Yuan Huang; Chih-Hung Chou; Yi-Ming Sun; Ming-Ta Hsu; Ann-Ping Tsou (BMC Genom., 2015)

Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a. - Hua-Qing Wu; Mei-Ling Cheng; Jin-Mei Lai; Hsuan-Hui Wu; Meng-Chun Chen; Wen-Huan Liu; Wu-Hsiung Wu; Peter Mu-Hsin Chang; Chi-Ying F. Huang; Ann-Ping Tsou; Ming-Shi Shiao; Feng-Sheng Wang (PLoS Comput. Biol., 2017)