Conceptual Modeling for Genomics: Building an Integrated Repository of Open Data. - Anna Bernasconi 002; Stefano Ceri; Alessandro Campi; Marco Masseroli (ER, 2017)

Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome. - Stefano Ceri; Anna Bernasconi 002; Arif Canakoglu; Andrea Gulino; Abdulrahman Kaitoua; Marco Masseroli; Luca Nanni; Pietro Pinoli (DAMDID/RCDL (Selected Papers), 2017)

From Model Checking to a Temporal Proof for Partial Models. - Anna Bernasconi 002; Claudio Menghi; Paola Spoletini; Lenore D. Zuck; Carlo Ghezzi (SEFM, 2017)

From model checking to a temporal proof for partial models: preliminary example. - Anna Bernasconi 002; Claudio Menghi; Paola Spoletini; Lenore D. Zuck; Carlo Ghezzi (CoRR, 2017)

Using Metadata for Locating Genomic Datasets on a Global Scale. - Anna Bernasconi 002 (CIKM Workshops, 2018)

Ontology-driven metadata enrichment for genomic datasets. - Anna Bernasconi 002; Arif Canakoglu; Andrea Colombo; Stefano Ceri (SWAT4LS, 2018)

Using GMQL-Web for Querying, Downloading and Integrating Public with Private Genomic Datasets. - Marzia Settino; Anna Bernasconi 002; Gaia Ceddia; Giuseppe Agapito; Marco Masseroli; Mario Cannataro (BCB, 2019)

From a Conceptual Model to a Knowledge Graph for Genomic Datasets. - Anna Bernasconi 002; Arif Canakoglu; Stefano Ceri (ER, 2019)

Exploiting Conceptual Modeling for Searching Genomic Metadata: A Quantitative and Qualitative Empirical Study. - Anna Bernasconi 002; Arif Canakoglu; Stefano Ceri (ER Workshops, 2019)

GenoSurf: metadata driven semantic search system for integrated genomic datasets. - Arif Canakoglu; Anna Bernasconi 002; Andrea Colombo; Marco Masseroli; Stefano Ceri (Database J. Biol. Databases Curation, 2019)

Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data. - Marco Masseroli; Arif Canakoglu; Pietro Pinoli; Abdulrahman Kaitoua; Andrea Gulino; Olha Horlova; Luca Nanni; Anna Bernasconi 002; Stefano Perna; Eirini Stamoulakatou; Stefano Ceri (Bioinform., 2019)

Biological and Medical Ontologies: Disease Ontology (DO). - Anna Bernasconi 002; Marco Masseroli (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Biological and Medical Ontologies: Human Phenotype Ontology (HPO). - Anna Bernasconi 002; Marco Masseroli (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Biological and Medical Ontologies: Systems Biology Ontology (SBO). - Anna Bernasconi 002; Marco Masseroli (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Empowering Virus Sequence Research Through Conceptual Modeling. - Anna Bernasconi 002; Arif Canakoglu; Pietro Pinoli; Stefano Ceri (ER, 2020)

Integrating Topological Proofs with Model Checking to Instrument Iterative Design. - Claudio Menghi; Alessandro Maria Rizzi; Anna Bernasconi 002 (FASE, 2020)

Automated Integration of Genomic Metadata with Sequence-to-Sequence Models. - Giuseppe Cannizzaro; Michele Leone; Anna Bernasconi 002; Arif Canakoglu; Mark J. Carman (ECML/PKDD (5), 2020)

OpenGDC. - Fabio Cumbo; Eleonora Cappelli; Anna Bernasconi 002; Arif Canakoglu; Stefano Ceri; Marco Masseroli; Emanuel Weitschek (Zenodo, 2020)

Ontological Unpacking as Explanation: The Case of the Viral Conceptual Model. - Giancarlo Guizzardi; Anna Bernasconi 002; Oscar Pastor 001; Veda C. Storey (ER, 2021)

CoV2K: A Knowledge Base of SARS-CoV-2 Variant Impacts. - Ruba Al Khalaf; Tommaso Alfonsi; Stefano Ceri; Anna Bernasconi 002 (RCIS, 2021)

Extreme Requirements Elicitation: Lessons Learnt from the COVID-19 Case Study. - Anna Bernasconi 002 (REFSQ Workshops, 2021)

The road towards data integration in human genomics: players, steps and interactions. - Anna Bernasconi 002; Arif Canakoglu; Marco Masseroli; Stefano Ceri (Briefings Bioinform., 2021)

A review on viral data sources and search systems for perspective mitigation of COVID-19. - Anna Bernasconi 002; Arif Canakoglu; Marco Masseroli; Pietro Pinoli; Stefano Ceri (Briefings Bioinform., 2021)

EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species. - Anna Bernasconi 002; Luca Cilibrasi; Ruba Al Khalaf; Tommaso Alfonsi; Stefano Ceri; Pietro Pinoli; Arif Canakoglu (Database J. Biol. Databases Curation, 2021)

TOrPEDO: witnessing model correctness with topological proofs. - Claudio Menghi; Alessandro Maria Rizzi; Anna Bernasconi 002; Paola Spoletini (Formal Aspects Comput., 2021)

A Conceptual Model for Geo-Online Exploratory Data Visualization: The Case of the COVID-19 Pandemic. - Anna Bernasconi 002; Silvia Grandi (Inf., 2021)

ViruSurf: an integrated database to investigate viral sequences. - Arif Canakoglu; Pietro Pinoli; Anna Bernasconi 002; Tommaso Alfonsi; Damianos P. Melidis; Stefano Ceri (Nucleic Acids Res., 2021)

Model, integrate, search... repeat: a sound approach to building integrated repositories of genomic data. - Anna Bernasconi 002 (2021)

Analysis of amino acid change dynamics reveals SARS-CoV-2 variant emergence. - Anna Bernasconi 002; Lorenzo Mari; Renato Casagrandi; Stefano Ceri (Zenodo, 2021)

An Ontological Characterization of a Conceptual Model of the Human Genome. - Alberto García S.; Giancarlo Guizzardi; Oscar Pastor 001; Veda C. Storey; Anna Bernasconi 002 (CAiSE Forum, 2022)

Conceptual models and databases for searching the genome. - Anna Bernasconi 002; Pietro Pinoli (EDBT, 2022)

A Comprehensive Approach for the Conceptual Modeling of Genomic Data. - Anna Bernasconi 002; Alberto García S.; Stefano Ceri; Oscar Pastor 001 (ER, 2022)

An Initial Empirical Assessment of an Ontological Model of the Human Genome. - Alberto García S.; Anna Bernasconi 002; Giancarlo Guizzardi; Oscar Pastor 001; Veda C. Storey; Mireia Costa 001 (ER (Workshops), 2022)

A Sound and Repeatable Approach to Building Integrated Repositories of Genomic Data. - Anna Bernasconi 002 (itaDATA, 2022)

Expressing Biological Problems with Logical Reasoning Languages. - Tommaso Alfonsi; Luigi Bellomarini; Anna Bernasconi 002; Stefano Ceri (RuleML+RR (Companion), 2022)

GeMI: interactive interface for transformer-based Genomic Metadata Integration. - Giuseppe Serna Garcia; Michele Leone; Anna Bernasconi 002; Mark J. Carman (Database J. Biol. Databases Curation, 2022)

ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time. - Luca Cilibrasi; Pietro Pinoli; Anna Bernasconi 002; Arif Canakoglu; Matteo Chiara; Stefano Ceri (Bioinform., 2022)

Genomic data integration and user-defined sample-set extraction for population variant analysis. - Tommaso Alfonsi; Anna Bernasconi 002; Arif Canakoglu; Marco Masseroli (BMC Bioinform., 2022)

Semantic interoperability: ontological unpacking of a viral conceptual model. - Anna Bernasconi 002; Giancarlo Guizzardi; Oscar Pastor 001; Veda C. Storey (BMC Bioinform., 2022)

GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis. - Pietro Crovari; Sara Pidò; Pietro Pinoli; Anna Bernasconi 002; Arif Canakoglu; Franca Garzotto; Stefano Ceri (ACM Trans. Comput. Heal., 2022)

META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration. - Anna Bernasconi 002; Arif Canakoglu; Marco Masseroli; Stefano Ceri (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Ontological Representation of FAIR Principles: A Blueprint for FAIRer Data Sources. - Anna Bernasconi 002; Alberto García Simón; Giancarlo Guizzardi; Luiz Olavo Bonino da Silva Santos; Veda C. Storey (CAiSE, 2023)

A Reference Meta-model to Understand DNA Variant Interpretation Guidelines. - Mireia Costa 001; Alberto García S.; Ana León 001; Anna Bernasconi 002; Oscar Pastor 001 (ER, 2023)

OntoEffect: An OntoUML-Based Ontology to Explain SARS-CoV-2 Variants' Effects. - Ruba Al Khalaf; Anna Bernasconi 002; Alberto García S. (KEOD, 2023)

The Opportunity of Data-Driven Services for Viral Genomic Surveillance. - Anna Bernasconi 002 (SOSE, 2023)

VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants. - Pietro Pinoli; Arif Canakoglu; Stefano Ceri; Matteo Chiara; Erika Ferrandi; Luca Minotti; Anna Bernasconi 002 (Database J. Biol. Databases Curation, 2023)

PG-Triggers: Triggers for Property Graphs. - Alessia Gagliardi; Anna Bernasconi 002; Davide Martinenghi; Stefano Ceri (CoRR, 2023)

Searching COVID-19 clinical research using graphical abstracts. - Francesco Invernici; Anna Bernasconi 002; Stefano Ceri (CoRR, 2023)

Model, Integrate, Search... Repeat - A Sound Approach to Building Integrated Repositories of Genomic Data - Anna Bernasconi 002 (Springer, 2023)

Supporting data for "CoVEffect: Interactive System for Mining the Effects of SARS-CoV-2 Mutations and Variants Based on Deep Learning". - Giuseppe Serna Garcia; Ruba Al Khalaf; Francesco Invernici; Anna Bernasconi 002; Stefano Ceri (Zenodo, 2023)

Editorial: Identification of phenotypically important genomic variants. - Elizabeth A. Heron; Giorgio Valle; Anna Bernasconi 002 (Frontiers Bioinform., 2023)

Supporting data and code for "Data-driven recombination detection in viral genomes". - Tommaso Alfonsi; Anna Bernasconi 002; Matteo Chiara; Stefano Ceri (Zenodo, 2023)

PoliViews: A comprehensive and modular approach to the conceptual modeling of genomic data. - Anna Bernasconi 002; Alberto García S.; Stefano Ceri; Oscar Pastor 001 (Data Knowl. Eng., 2023)

Assessing the value of ontologically unpacking a conceptual model for human genomics. - Alberto García S.; Anna Bernasconi 002; Giancarlo Guizzardi; Oscar Pastor 001; Veda C. Storey; José Ignacio Panach (Inf. Syst., 2023)

Supporting data and code for "Data-driven recombination detection in viral genomes". - Tommaso Alfonsi; Anna Bernasconi 002; Matteo Chiara; Stefano Ceri (Zenodo, 2023)

SENSIBLE: Implementing Data-Driven Early Warning Systems for Future Viral Epidemics. - Anna Bernasconi 002; Matteo Chiara; Tommaso Alfonsi; Stefano Ceri (CAiSE Research Projects Exhibition, 2024)

TETYS: Towards the Next-Generation Open-Source Web Topic Explorer. - Anna Bernasconi 002; Francesco Invernici; Stefano Ceri (CAiSE Research Projects Exhibition, 2024)

Towards an Explorable Conceptual Map of Large Language Models. - Lorenzo Bertetto; Francesca Bettinelli; Alessio Buda; Marco Da Mommio; Simone Di Bari; Claudio Savelli; Elena Baralis; Anna Bernasconi 002; Luca Cagliero; Stefano Ceri; Francesco Pierri 002 (CAiSE Forum, 2024)

A Conceptual Approach to using Relevant Patterns in Genomic Data Analysis. - Mireia Costa 001; Alberto García S.; Anna Bernasconi 002; Stefano Ceri; Oscar Pastor 001 (ER (Companion), 2024)

Reactive Knowledge Management. - Stefano Ceri; Anna Bernasconi 002; Alessia Gagliardi (ICDE, 2024)

Towards a Standard for Triggers in Property Graphs. - Luigi Bellomarini; Anna Bernasconi 002; Stefano Ceri; Alessia Gagliardi; Davide Magnanimi; Davide Martinenghi (SEBD, 2024)

PG-Triggers: Triggers for Property Graphs. - Stefano Ceri; Anna Bernasconi 002; Alessia Gagliardi; Davide Martinenghi; Luigi Bellomarini; Davide Magnanimi (SIGMOD Conference Companion, 2024)

Achieving data FAIRification in a distributed analytics research platform for rare diseases. - Anna Bernasconi 002; Cinzia Cappiello; Stefano Ceri; Pietro Pinoli (SWAT4HCLS, 2024)

Modelling Legislative Systems into Property Graphs to Enable Advanced Pattern Detection. - Andrea Colombo; Anna Bernasconi 002; Stefano Ceri (CoRR, 2024)

MINE GRAPH RULE: A New Cypher-like Operator for Mining Association Rules on Property Graphs. - Francesco Cambria; Francesco Invernici; Anna Bernasconi 002; Stefano Ceri (CoRR, 2024)

VarClaMM: A reference meta-model to understand DNA variant classification. - Mireia Costa 001; Alberto García S.; Ana León 001; Anna Bernasconi 002; Oscar Pastor 001 (Data Knowl. Eng., 2024)

Exploring the evolution of research topics during the COVID-19 pandemic. - Francesco Invernici; Anna Bernasconi 002; Stefano Ceri (Expert Syst. Appl., 2024)

Supporting data and code for "Data-driven recombination detection in viral genomes". - Tommaso Alfonsi; Anna Bernasconi 002; Matteo Chiara; Stefano Ceri (Zenodo, 2024)

Supporting data and code for "Data-driven recombination detection in viral genomes". - Tommaso Alfonsi; Anna Bernasconi 002; Matteo Chiara; Stefano Ceri (Zenodo, 2024)

Italian Legislative Property Graph. - Andrea Colombo; Anna Bernasconi 002; Stefano Ceri (Zenodo, 2024)

Supporting data and code for "Data-driven recombination detection in viral genomes". - Tommaso Alfonsi; Anna Bernasconi 002; Matteo Chiara; Stefano Ceri (Zenodo, 2024)

Leveraging Profiling to Bridge Healthcare Silos for Federated Analyses. - Nelly Barret; Anna Bernasconi 002; Cinzia Cappiello; Giacomo Palu; Pietro Pinoli (CAiSE Forum, 2025)

TETYS: Configurable Topic Modeling Exploration for Big Corpora of Text Documents. - Francesco Invernici; Anna Bernasconi 002; Francesca Curati; Jelena Jakimov; Amirhossein Samavi (EDBT, 2025)

Enabling Light-Weight Reasoning via Cypher Triggers. - Davide Magnanimi; Andrea Colombo; Luigi Bellomarini; Anna Bernasconi 002; Stefano Ceri; Davide Martinenghi (ICDE, 2025)

Special issue on big data computing service and machine learning applications. - Katerina Potika; Magdalini Eirinaki; Monica Vitali; Anna Bernasconi 002; Hiroyuki Fujioka (Future Gener. Comput. Syst., 2025)

An LLM-assisted ETL pipeline to build a high-quality knowledge graph of the Italian legislation. - Andrea Colombo; Anna Bernasconi 002; Stefano Ceri (Inf. Process. Manag., 2025)

Supporting data and code for "Multi-scale early spillover warnings for influenza A viruses". - Tommaso Alfonsi; Anna Bernasconi 002; Matteo Chiara; Stefano Ceri (Zenodo, 2025)

Supporting data and code for "Multi-scale early spillover warnings for influenza A viruses". - Tommaso Alfonsi; Anna Bernasconi 002; Matteo Chiara; Stefano Ceri (Zenodo, 2025)

Mine Graph Rule: A New GQL Operator for Mining Association Rules in Property Graph Databases. - Francesco Cambria; Francesco Invernici; Anna Bernasconi 002; Stefano Ceri (VLDB J., 2025)

Capturing research literature attitude towards sustainable development goals: an LLM-based topic modeling approach. - Francesco Invernici; Francesca Curati; Jelena Jakimov; Amirhossein Samavi; Anna Bernasconi 002 (J. Big Data, 2025)