Molecular basis for the increased affinity of an RNA recognition motif with re-engineered specificity: A molecular dynamics and enhanced sampling simulations study. - Anna Bochicchio; Miroslav Krepl; Fan Yang; Gabriele Varani; Jirí Sponer; Paolo Carloni (PLoS Comput. Biol., 2018)

Accurate Physics-Based Prediction of Binding Affinities of RNA- and DNA-Targeting Ligands. - Ara M. Abramyan; Anna Bochicchio; Chuanjie Wu; Wolfgang Damm; David R. Langley; Devleena Shivakumar; Dmitry Lupyan; Lingle Wang; Edward Harder; Eliud O. Oloo (J. Chem. Inf. Model., 2025)

Enabling In-Silico Hit Discovery Workflows Targeting RNA with Small Molecules. - Nikita Chopra; Ara M. Abramyan; Zeineb Si Chaib; Wei Chen; Yeyue Xiong; Anna Bochicchio; David Rinaldo; Steven V. Jerome; Yuqi Zhang 003 (J. Chem. Inf. Model., 2025)