SecretSanta: flexible pipelines for functional secretome prediction. - Anna Gogleva; Hajk-Georg Drost; Sebastian Schornack (Bioinform., 2018)

Drug Discovery as a Recommendation Problem: Challenges and Complexities in Biological Decisions. - Anna Gogleva; Eliseo Papa; Erik Jansson; Greet De Baets (RecSys, 2021)

MOOMIN: Deep Molecular Omics Network for Anti-Cancer Drug Combination Therapy. - Benedek Rozemberczki; Anna Gogleva; Sebastian Nilsson; Gavin Edwards; Andriy Nikolov; Eliseo Papa (CIKM, 2022)

ChemicalX: A Deep Learning Library for Drug Pair Scoring. - Benedek Rozemberczki; Charles Tapley Hoyt; Anna Gogleva; Piotr Grabowski; Klas Karis; Andrej Lamov; Andriy Nikolov; Sebastian Nilsson; Michaël Ughetto; Yu Wang 160; Tyler Derr; Benjamin M. Gyori (KDD, 2022)

OntoMerger: An Ontology Integration Library for Deduplicating and Connecting Knowledge Graph Nodes. - David Geleta; Andriy Nikolov; Mark ODonoghue; Benedek Rozemberczki; Anna Gogleva; Valentina Tamma; Terry R. Payne (CoRR, 2022)