Influence of temperature, friction, and random forces on folding of the B-domain of staphylococcal protein A: All-atom molecular dynamics in implicit solvent. - Anna Jagielska; Harold A. Scheraga (J. Comput. Chem., 2007)

Origin of intrinsic 310-helix versus strand stability in homopolypeptides and its implications for the accuracy of the Amber force field. - Anna Jagielska; Jeffrey Skolnick (J. Comput. Chem., 2007)

Learning Protein Folding Energy Functions. - Wei Guan 002; Arkadas Ozakin; Alexander G. Gray; Jose Borreguero; Shashi Bhushan Pandit; Anna Jagielska; Liliana Wroblewska; Jeffrey Skolnick (ICDM, 2011)