Optimally discriminative subnetwork markers predict response to chemotherapy. - Phuong Dao; Kendric Wang; Colin C. Collins; Martin Ester; Anna Lapuk; Süleyman Cenk Sahinalp (Bioinform., 2011)

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data. - Andrew W. McPherson; Chunxiao Wu; Iman Hajirasouliha; Fereydoun Hormozdiari; Faraz Hach; Anna Lapuk; Stanislav Volik; Sohrab P. Shah; Colin C. Collins; Süleyman Cenk Sahinalp (Bioinform., 2011)

CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population. - Yen-Yi Lin; Phuong Dao; Faraz Hach; Marzieh Bakhshi; Fan Mo; Anna Lapuk; Colin C. Collins; Süleyman Cenk Sahinalp (WABI, 2012)