Adapting K-Medians to Generate Normalized Cluster Centers. - Benjamin J. Anderson; Deborah S. Gross; David R. Musicant; Anna M. Ritz; Thomas G. Smith; Leah E. Steinberg (SDM, 2006)

Discovery of phosphorylation motif mixtures in phosphoproteomics data. - Anna M. Ritz; Gregory Shakhnarovich; Arthur R. Salomon; Benjamin J. Raphael (Bioinform., 2009)

Structural variation analysis with strobe reads. - Anna M. Ritz; Ali Bashir; Benjamin J. Raphael (Bioinform., 2010)

Environmental chemistry through intelligent atmospheric data analysis. - Deborah S. Gross; Robert Atlas; Jeffrey Rzeszotarski; Emma Turetsky; Janara M. Christensen; Sami Benzaid; Jamie F. Olson; Thomas Smith 003; Leah E. Steinberg; Jon Sulman; Anna M. Ritz; Benjamin J. Anderson; et al. (Environ. Model. Softw., 2010)

Gremlin: An Interactive Visualization Model for Analyzing Genomic Rearrangements. - Trevor M. O'Brien; Anna M. Ritz; Benjamin J. Raphael; David H. Laidlaw (IEEE Trans. Vis. Comput. Graph., 2010)

Workshop: Characterization of structural variants with next generation DNA sequencing. - Benjamin J. Raphael; Suzanne S. Sindi; Anna M. Ritz; Ali Bashir (ICCABS, 2011)

Detection of recurrent rearrangement breakpoints from copy number data. - Anna M. Ritz; Pamela L. Paris; Michael Ittmann; Colin C. Collins; Benjamin J. Raphael (BMC Bioinform., 2011)

Reconstructing cancer genomes from paired-end sequencing data. - Layla Oesper; Anna M. Ritz; Sarah J. Aerni; Ryan Drebin; Benjamin J. Raphael (BMC Bioinform., 2012)

Algorithms for Identifying Structural Variants in Human Genomes. - Anna M. Ritz (2013)

GraphSpace: sharing and collaborating through networks on the web. - Craig Estep; Jaeil Yi; Anna M. Ritz; T. M. Murali 001 (BCB, 2014)

Pathway analysis with signaling hypergraphs. - Anna M. Ritz; T. M. Murali 001 (BCB, 2014)

Characterization of structural variants with single molecule and hybrid sequencing approaches. - Anna M. Ritz; Ali Bashir; Suzanne S. Sindi; David Hsu; Iman Hajirasouliha; Benjamin J. Raphael (Bioinform., 2014)

Reconstructing Neuronal Signaling Pathways With the Potential for Disruption in Schizophrenia. - Nicole Ezell; Anna M. Ritz (BCB, 2016)

Copy Number Variation and Adaptive Evolutionary Radiations across the African Cichlid phylogeny. - Karl Menzel; Suzy C. P. Renn; Anna M. Ritz (BCB, 2016)

Modeling Cell Signaling Networks with Prize-Collecting Subhypernetworks. - Barney Potter; James D. Fix; Anna M. Ritz (BCB, 2016)

Breaking Ties in Weighted Interactomes. - Ibrahim Youssef; Anna M. Ritz (BCB, 2017)

GraphSpace: stimulating interdisciplinary collaborations in network biology. - Aditya Bharadwaj; Divit P. Singh; Anna M. Ritz; Allison N. Tegge; Christopher L. Poirel; Pavel K. Brazhnik; Neil Adames; Kurt Luther; Shiv D. Kale; Jean Peccoud; John J. Tyson; T. M. Murali 001 (Bioinform., 2017)

Pathway Analysis with Signaling Hypergraphs. - Anna M. Ritz; Brendan Avent; T. M. Murali 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Network-Based Prediction of Polygenic Disease Genes Involved in Cell Motility: Extended Abstract. - Miriam Bern; Alexander King; Derek A. Applewhite; Anna M. Ritz (BCB, 2018)

Differentially Private ANOVA Testing. - Zachary Campbell; Andrew Bray; Anna M. Ritz; Adam Groce (ICDIS, 2018)

Programming the Central Dogma: An Integrated Unit on Computer Science and Molecular Biology Concepts. - Anna M. Ritz (SIGCSE, 2018)

Modeling Phytoplankton Movement and Fitness in Lakes. - Amy R. Lazarte; Samuel B. Fey; Anna M. Ritz (BCB, 2019)

Factors Affecting Network-Based Gene Prediction Across Diverse Diseases. - Alexander King; Ibrahim Youssef; Anna M. Ritz (BIBM, 2019)

Network-based prediction of polygenic disease genes involved in cell motility. - Miriam Bern; Alexander King; Derek A. Applewhite; Anna M. Ritz (BMC Bioinform., 2019)

Integrating protein localization with automated signaling pathway reconstruction. - Ibrahim Youssef; Jeffrey N. Law; Anna M. Ritz (BMC Bioinform., 2019)

Hypergraph-based connectivity measures for signaling pathway topologies. - Nicholas Franzese; Adam Groce; T. M. Murali 001; Anna M. Ritz (PLoS Comput. Biol., 2019)

Improved Differentially Private Analysis of Variance. - Marika Swanberg; Ira Globus-Harris; Iris Griffith; Anna M. Ritz; Adam Groce; Andrew Bray (Proc. Priv. Enhancing Technol., 2019)

Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks. - Ananthan Nambiar; Maeve Heflin; Simon Liu; Sergei Maslov; Mark Hopkins; Anna M. Ritz (BCB, 2020)

A Protein-Protein Interactome for an African Cichlid. - Gabriel A. Preising; Joshua J. Faber-Hammond; Suzy C. P. Renn; Anna M. Ritz (BCB, 2020)

Augmenting Signaling Pathway Reconstructions. - Tobias Rubel; Anna M. Ritz (BCB, 2020)

Graphery: a Biological Network Algorithm Tutorial Webservice. - Heyuan Zeng; Anna M. Ritz (BCB, 2020)

Prefix/Suffix Variation in Retinoic Acid Response Elements. - Yuan Zhuang; Kara L. Cerveny; Anna M. Ritz (BCB, 2020)

Lowering the Barrier for Undergraduates to Learn about Computational Research through a Course-Based Conference Experience. - Amy R. Lazarte; Anna M. Ritz (RESPECT, 2020)

Distance measures for tumor evolutionary trees. - Zach Dinardo; Kiran Tomlinson; Anna M. Ritz; Layla Oesper (Bioinform., 2020)

MsPAC: a tool for haplotype-phased structural variant detection. - Oscar L. Rodriguez; Anna M. Ritz; Andrew J. Sharp; Ali Bashir (Bioinform., 2020)

Supporting and teaching students at liberal arts colleges in online courses. - Haiyan Cheng; Shereen Kjoha; Anna M. Ritz; Tammy VanDeGrift (J. Comput. Sci. Coll., 2020)

Graphery: interactive tutorials for biological network algorithms. - Heyuan Zeng; Jinbiao Zhang; Gabriel A. Preising; Tobias Rubel; Pramesh Singh; Anna M. Ritz (Nucleic Acids Res., 2021)

Ten simple rules for attending your first conference. - Elizabeth Leininger; Kelly Shaw; Niema Moshiri; Kelly Neiles; Getiria Onsongo; Anna M. Ritz (PLoS Comput. Biol., 2021)

FiT: fiber-based tensor completion for drug repurposing. - Aysegul Bumin; Anna M. Ritz; Donna K. Slonim; Tamer Kahveci; Kejun Huang (BCB, 2022)

Transformer Neural Networks for Protein Family and Interaction Prediction Tasks. - Ananthan Nambiar; Simon Liu; Maeve Heflin; John Malcolm Forsyth; Sergei Maslov; Mark Hopkins; Anna M. Ritz (J. Comput. Biol., 2023)

Special Issue Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC) Workshop (2022). - Hyundoo Jeong; Jose Lugo-Martinez; Anna M. Ritz; Yijie Wang; Chi Zhang 021 (J. Comput. Biol., 2023)

Growing Directed Acyclic Graphs: Optimization Functions for Pathway Reconstruction Algorithms. - Tunç Basar Köse; Jiarong Li; Anna M. Ritz (J. Comput. Biol., 2023)

Simplifying Signaling Pathway Reconstruction with Containerized Random Walk Algorithms. - Yancheng Liu; Anna M. Ritz (SIGCSE (2), 2024)

Undergraduate Perceptions on Attending Interdisciplinary Conferences. - Anna M. Ritz (J. Comput. Sci. Coll., 2024)

Designing Contributing Guides to Facilitate Undergraduate Software Development Research. - Anna M. Ritz; Oliver Anderson; Altaf Barelvi (J. Comput. Sci. Coll., 2024)

CNB-MAC 2023 Special Issue. - Anna M. Ritz (J. Comput. Biol., 2025)