MMBIRFinder: A Tool to Detect Microhomology-Mediated Break-Induced Replication. - Matthew W. Segar; Cynthia J. Sakofsky; Anna Malkova; Yunlong Liu (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Concurrent MMBIRFinder. - Thamer Alsulaiman; Beth Osia; Anna Malkova; Suely Oliveira (ICCABS, 2017)

Receding horizon optimization for distributed control of electric vehicle charging stations. - Anna Malkova; Jan Martin Zepter; Mattia Marinelli; Herbert Amezquita; Hugo Morais (ISGT EUROPE, 2024)