AMIGOS III: pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids. - Morgan Shine; Chengxin Zhang; Anna Marie Pyle (Bioinform., 2022)

PDC: a highly compact file format to store protein 3D coordinates. - Chengxin Zhang; Anna Marie Pyle (Database J. Biol. Databases Curation, 2023)

RSCanner: rapid assessment and visualization of RNA structure content. - Gandhar Mahadeshwar; Rafael de Cesaris Araujo Tavares; Han Wan; Zion R. Perry; Anna Marie Pyle (Bioinform., 2023)