Analysis of Conserved Hydrophobic Cores in Proteins and Supramolecular Complexes. - Anna S. Karyagina; Anna S. Ershova; Mikhail Titov; Ivan Olovnikov; Evgeniy Aksianov; Alexandra Ryazanova; Elena Kubareva; Sergei A. Spirin; Andrei Alexeevski (J. Bioinform. Comput. Biol., 2006)

NPIDB: a Database of Nucleic Acids-Protein Interactions. - Sergei A. Spirin; Mikhail Titov; Anna S. Karyagina; Andrei Alexeevski (Bioinform., 2007)

Conserved water molecules in X-Ray Structures Highlight the Role of water in intramolecular and intermolecular Interactions. - Evgeniy Aksianov; Olga Zanegina; Alexander Grishin; Sergei A. Spirin; Anna S. Karyagina; Andrei Alexeevski (J. Bioinform. Comput. Biol., 2008)

Identification of conserved Features of Laglidadg Homing endonucleases. - Alexander Grishin; Ines Fonfara; Andrei Alexeevski; Sergei A. Spirin; Olga Zanegina; Anna S. Karyagina; Daniil Alexeyevsky; Wolfgang Wende (J. Bioinform. Comput. Biol., 2010)

Probe-Level Universal Search (Plus) Algorithm for Gender Differentiation in Affymetrix Datasets. - Anna S. Karyagina; Michail O. Vassiliev; Anna S. Ershova; Ramil N. Nurtdinov; Ilya S. Lossev (J. Bioinform. Comput. Biol., 2010)

PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays. - Ramil N. Nurtdinov; Mikhail O. Vasiliev; Anna S. Ershova; Ilia S. Lossev; Anna S. Karyagina (Nucleic Acids Res., 2010)

NPIDB: nucleic acid - protein interaction database. - Dmitry D. Kirsanov; Olga Zanegina; Evgeniy Aksianov; Sergei A. Spirin; Anna S. Karyagina; Andrei Alexeevski (Nucleic Acids Res., 2013)

Restriction-Modification systems interplay causes avoidance of GATC site in prokaryotic genomes. - Anna S. Ershova; Ivan Rusinov; Mikhail O. Vasiliev; Sergei A. Spirin; Anna S. Karyagina (J. Bioinform. Comput. Biol., 2016)

Conserved features of complexes of TATA-box binding proteins with DNA. - Olga Zanegina; Evgeniy Aksianov; Andrei V. Alexeevski; Anna S. Karyagina; Sergei A. Spirin (J. Bioinform. Comput. Biol., 2016)

An updated version of NPIDB includes new classifications of DNA-protein complexes and their families. - Olga Zanegina; Dmitry D. Kirsanov; Eugene Baulin; Anna S. Karyagina; Andrei Alexeevski; Sergei A. Spirin (Nucleic Acids Res., 2016)